Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2740 ATGAGCATTTCAGACACCAACGCGAAATTCGCCTCTAAAATGGAGAAAGAAGAGAAAGTATCTTTGGAGCTTAGTGAGGAAATTCTTCAGAGTATGGAAGTTGGAATGTCCTTCAAAGACTACAATGGTAGAATTAGTTCGATGGATTTTCATAGGGCGTCCAGTTATCTAGTTACAGCCAGTGATGATGAATCCATTCGTCTATATGATGTTGCTGCTGGAACATGTTTGAAGACAATTAATAGCAAGAAGTATGGGGTTGATTTGGTTTGCTTCACATCTCATCCTACAACTGTTATTTACTCTTCTAAGAATGGTTGGGATGAATCTTTGCGGCTTCTATCATTGCATGATAACAAGTACTTGAGATATTTCAAAGGTCATCATGACAGGGTTGTTTCACTTAGCTTGTGCTCTCGGAAAGATTGCTTTATATCTGGATCCTTAGATCGAACTGTTTTACTATGGGATCAAAGGGCTGAGAAGTGCCAGGGACTTTTACATGTACAAGGAAGGCCTGCTATATCATATGATGATCAAGGGCTTGTCTTTGCGGTAGCCTTTGGAGGATACATAAGAATGTTTGATGCACGGAAGTATGAAAAGGGTCCCTTTGAGATATTTTCTGTTGGGGGCGATACTTCTGATGCAAATGTTGTGAAGTTTAGTAATGATGGGAGACTCATTCTCTTAACAACTGCAGATGGGCATGTCCATGTTCTTGACTCATTCCGCGTTATCCACACATAA 750 0.4013 MSISDTNAKFASKMEKEEKVSLELSEEILQSMEVGMSFKDYNGRISSMDFHRASSYLVTASDDESIRLYDVAAGTCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSRKDCFISGSLDRTVLLWDQRAEKCQGLLHVQGRPAISYDDQGLVFAVAFGGYIRMFDARKYEKGPFEIFSVGGDTSDANVVKFSNDGRLILLTTADGHVHVLDSFRVIHT* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2740 249 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 12 245 - -
Psa4g2740 249 PANTHER WD40 REPEAT PROTEIN SWD2 12 245 IPR037867 GO:0048188
Psa4g2740 249 SUPERFAMILY WD40 repeat-like 36 244 IPR036322 GO:0005515
Psa4g2740 249 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 38 71 - -
Psa4g2740 249 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 125 157 - -
Psa4g2740 249 SMART WD40_4 118 157 IPR001680 GO:0005515
Psa4g2740 249 SMART WD40_4 31 70 IPR001680 GO:0005515
Psa4g2740 249 SMART WD40_4 203 242 IPR001680 GO:0005515
Psa4g2740 249 ProSiteProfiles Trp-Asp (WD) repeats profile. 38 79 IPR001680 GO:0005515
Psa4g2740 249 Gene3D - 24 248 IPR015943 GO:0005515
Psa4g2740 249 Pfam WD domain, G-beta repeat 121 157 IPR001680 GO:0005515
Psa4g2740 249 Pfam WD domain, G-beta repeat 43 70 IPR001680 GO:0005515
Psa4g2740 249 ProSiteProfiles Trp-Asp (WD) repeats profile. 125 157 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2740 Psa-Chr4 217582437 217586257 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2740 37 241 U-box Gene Family AT1G04510 23.445 4.37e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2740 K14962 - gmx:100810444 449.129