Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2688 ATGGTTATCGCTAGTAATGATGACGAAGAAAATCTAATGAATGTTCAAAGCCATACTAAAACTGAGTATAAAGAATGCAGAAAGAATCACGCTTTCAAAATTGGATGCTACGCCATTGATGGTTGTTGCGAGTTTTTGCCGGCAGGAACTGAAGGTACTGTCGAATTTTTCAAATGTGCTGCTTGTGGCTGTCATAGAAATTTTCACCGTAAAGAAACTATTGTTGTTACTGTAGAGCAGGCTTTATCCCCTCTTAACATCAACCGTTTTCCTCAACCGACTCCCATTTCAACCGTTTTTCAAACTTCGACTGGTTACGTTCATGTTAATGGGCCGCCGAGGGGAGCCATTATTTATCCTGCTTTGCCTTCTGCCGTTGTGCATGGTAGAGAGCACTTGTCGAGGGAGAAGATTGAAGATAATGTTTGTGTTGTTGAATCCATCAATGGTGACGGAGAAGGATCGTCAAACTCAAAGAAGAGGTTCAGGACTAAATTTACTCATGAACAAAGAAAAAAGATGTTTGATTTTGCAGTGAAATCGGGTTGGAAGATTCCTAAGAAAGATGAGAATCTTGTGGAGGAATTTTGTAATGAAATTGGGGTGAAATGTCAAATTTTGAAGGTCTGGATGAATAATAACAAATACACCCTAGGGGAAAGGCACTAA 669 0.3976 MVIASNDDEENLMNVQSHTKTEYKECRKNHAFKIGCYAIDGCCEFLPAGTEGTVEFFKCAACGCHRNFHRKETIVVTVEQALSPLNINRFPQPTPISTVFQTSTGYVHVNGPPRGAIIYPALPSAVVHGREHLSREKIEDNVCVVESINGDGEGSSNSKKRFRTKFTHEQRKKMFDFAVKSGWKIPKKDENLVEEFCNEIGVKCQILKVWMNNNKYTLGERH* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2688 222 Gene3D - 145 219 - -
Psa4g2688 222 SUPERFAMILY Homeodomain-like 146 218 IPR009057 -
Psa4g2688 222 Pfam ZF-HD protein dimerisation region 21 73 IPR006456 -
Psa4g2688 222 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 22 72 IPR006456 -
Psa4g2688 222 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 8 220 - -
Psa4g2688 222 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 159 216 IPR006455 -
Psa4g2688 222 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 23 72 IPR006456 -
Psa4g2688 222 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 8 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2688 Psa-Chr4 213453236 213454081 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2688 19 218 ZF-HD Transcription Factor Family AT4G24660 41.748 1.97e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Psa4g2688 ZF-HD_dimer 3.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2688 - - mtr:MTR_2g076780 268.855