Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2643 ATGCCGTTAGGCACGGCCATACATAACATAGAAATAACACTTGGAAAGGGTGGGCAATTAGCTAGAGCAGCGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGTAAATCAGCAACATTAAAATTACCTTCTGGAGAGGTCCGTTTGATATCAAAAAACTGCTCAGCAACAGTCGGACAAGGTGGACAATTAGCTAGAGCAGCGGGGGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCAGCAACATTAAAATTACCTTCTGGAGAGGTCCGTTTGATATCAAAAAACTGCTCAGCAACAGTCGGACAAGTAGGGAATGTTGGGGTAAACCAGAAAAGTTTGGGCAGAGCCGGAGCTAAACATTGGCGAGGCAAGCGTCCTGTAGTAAGAGGGGTAGTTATGAACCCTGTAGACCATCCACATGGGGGTGGTGAAGGGAGGGCGCCAATTGGTAGAAAAAAACCCTCAACTCCTTGGGGTTATCCTGCACTCGGAAGAAGAACTAGAAAAAGCAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTAAATAG 561 0.4545 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGAKHWRGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPSTPWGYPALGRRTRKSNKYSDNLILRRRSK* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2643 186 PANTHER 39S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL 1 60 - -
Psa4g2643 186 PANTHER 39S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL 59 183 - -
Psa4g2643 186 Pfam Ribosomal Proteins L2, C-terminal domain 59 161 IPR022669 GO:0003735|GO:0005840|GO:0006412
Psa4g2643 186 TIGRFAM rplB_bact: ribosomal protein uL2 59 185 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Psa4g2643 186 Gene3D - 1 59 IPR014722 -
Psa4g2643 186 SMART Ribosomal_L2_C_2 1 163 IPR022669 GO:0003735|GO:0005840|GO:0006412
Psa4g2643 186 SUPERFAMILY Translation proteins SH3-like domain 59 183 IPR008991 -
Psa4g2643 186 PANTHER RIBOSOMAL PROTEIN L2 59 183 IPR002171 GO:0003735|GO:0005840|GO:0006412
Psa4g2643 186 PANTHER RIBOSOMAL PROTEIN L2 1 60 IPR002171 GO:0003735|GO:0005840|GO:0006412
Psa4g2643 186 MobiDBLite consensus disorder prediction 170 186 - -
Psa4g2643 186 Gene3D - 60 106 IPR014722 -
Psa4g2643 186 ProSitePatterns Ribosomal protein L2 signature. 128 139 IPR022671 GO:0003735|GO:0005840|GO:0006412
Psa4g2643 186 Gene3D Ribosomal protein L2, domain 3 107 185 IPR014726 -
Psa4g2643 186 SUPERFAMILY Translation proteins SH3-like domain 1 60 IPR008991 -
Psa4g2643 186 MobiDBLite consensus disorder prediction 139 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2643 Psa-Chr4 210610524 210611157 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2643 42 145 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 46.847 1.36e-17 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2643 K02886 - sly:16976780 248.44