Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2620 ATGGCTCGTTCGTTGTCTTTGGTGTCCACCATCTTTGTCTTCCTTCTTCTTGTTGCAACTAAGATGGGCCCGAGTATTGTGGCAGATGCAAGGGATTGTGAGTCACCAAGTCAAATATTCAAAGGATTGTGTTTCACTGACACCAATTGTGCTAGTGTGTGCCATACTGAGGGTTTCCCTGGAGGAAAATGTAAAGGCTTGCCTAAGAGATGTATTTGCACTAAACCTTGTTAA 234 0.4359 MARSLSLVSTIFVFLLLVATKMGPSIVADARDCESPSQIFKGLCFTDTNCASVCHTEGFPGGKCKGLPKRCICTKPC* 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2620 77 SUPERFAMILY Scorpion toxin-like 32 77 IPR036574 -
Psa4g2620 77 Gene3D - 31 77 IPR036574 -
Psa4g2620 77 PANTHER DEFENSIN-LIKE PROTEIN 1 1 77 - -
Psa4g2620 77 PANTHER DEFENSIN-LIKE PROTEIN P322 1 77 - -
Psa4g2620 77 Pfam Gamma-thionin family 32 77 - -
Psa4g2620 77 ProSitePatterns Gamma-thionins family signature. 31 54 IPR008176 GO:0006952
Psa4g2620 77 PRINTS Purothionin signature 32 47 IPR008176 GO:0006952
Psa4g2620 77 PRINTS Purothionin signature 62 76 IPR008176 GO:0006952
Psa4g2620 77 CDD Knot1 42 74 IPR003614 GO:0006952
Psa4g2620 77 SMART gth_4 32 77 IPR003614 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2620 Psa-Chr4 208915454 208916100 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2620 1 77 Plant Defensins Gene Families AT2G02120 52.564 1.90e-25 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2620 - - gsj:114420878 110.923