Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2602 ATGGAGACGTTATTCAGAAAACTACGCGAATCAGCATCATCGTTCAAGCGATCCAGCACCTCATCCAATTCACCAGAACGATCGCATCACCATCCTCATCATGCTCCTTTAGGTTTATTCGACTCACTTCCGTCTGACTTACTCCTCAAAATCATACGACTGTTAGACCCTAAACACGCCGCTAAACTCTGCATCGTTTGCAAATCATGGCGATCTCTTGTTTCCGATAACCAACTCTGGTCTGATTTCCTTCAGAATAACCAACCTCTACACTACGATTCCATTATCTTCTCGGAAACCAAATTAACCTCTGGTTATCCTCTTCCGTTCTTTGTTACTCAGACGCCACGTGTGTTGTCGTTTAAGCATGTTTATGGCCAGCGGGAACGGCTTCCTCCTGCTGTTATCATCGACGGTGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAAGAGGACCGTCCATTGGGGCGAACTGCTACCTTTTTGGAATTCGGTAATGTGGAGACACCGATATATAGTAGGCTTCGACATTTTTTTGGGACTGTCTATGGCAGGATGAAGGTGAAACCAAGTTCTCAAGCAGTTGTTGTTTCTTTACCAATATGCCACTATGATGATACTGAATCAGCCAGAGCATCAAGACAGCAGCTTAAAGAAGCAATCTGTGCTGCTCTATTTGACTTGAATGTTCCTGCTGTTTGTGCTCTCAACCAGGCAACTTTAGCTCTGTATGCTGCAAAACAAACTTCTGGAATATCTGTTAATATAGGCTTTCAAGTCACATCTGTAGTTCCAATTTTAAATGGTAAAGTCATGCGAAAGGTGGGTGTGGAGGTTGTGGGGTTGGGAGCACTAAAACTTACAGGATTTCTTAGAGAGAAAATGCAACAAAACAGCTTAAATTTTGAATCTTTGTACACTGTTCGCACACTGAAAGAGAAGCTATGCTATGTGGCCTATGACTATGAAGCTGAGCTATTGAAAGATACACAAGCATCATTTGAAGCTGGTGAAGGGAGGTATACACTCTCGAAAGAGCGGTTTCAAACAGGAGAGATTTTATTCCAGCCACGTCTTGCTGGGGTTCGAGCAATGAGTTTGCACCAGGCCACAGCTCTCTGTATGGACCATTGCTATTCTGCAGAATTAGCAGGCGGCAGTGATTGGTTTAAGACCATTGTCTTATCAGGAGGTTCTGCATGTTTACCAGGTTTAGCAGAAAGGTTAGAGAAGGAACTTCATTCGTTACTTCCCCATATGTCGAATGGAATCAGAGTCATCCCTCCTCCACATGGCGCGGATACTGCATGGTTTGGTGCAAAGCTTATTGGCAGTTTGAGCACATTTCCTGCCTCCTGGTGTACAACAAAGAAGCAGTTCCGTCAGAAGTCTAAACTCAAACGAATATGGTGA 1413 0.4395 METLFRKLRESASSFKRSSTSSNSPERSHHHPHHAPLGLFDSLPSDLLLKIIRLLDPKHAAKLCIVCKSWRSLVSDNQLWSDFLQNNQPLHYDSIIFSETKLTSGYPLPFFVTQTPRVLSFKHVYGQRERLPPAVIIDGGSGYCKFGWSKEDRPLGRTATFLEFGNVETPIYSRLRHFFGTVYGRMKVKPSSQAVVVSLPICHYDDTESARASRQQLKEAICAALFDLNVPAVCALNQATLALYAAKQTSGISVNIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQQNSLNFESLYTVRTLKEKLCYVAYDYEAELLKDTQASFEAGEGRYTLSKERFQTGEILFQPRLAGVRAMSLHQATALCMDHCYSAELAGGSDWFKTIVLSGGSACLPGLAERLEKELHSLLPHMSNGIRVIPPPHGADTAWFGAKLIGSLSTFPASWCTTKKQFRQKSKLKRIW* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2602 470 SUPERFAMILY Actin-like ATPase domain 249 457 IPR043129 -
Psa4g2602 470 Gene3D - 30 130 - -
Psa4g2602 470 PANTHER ACTIN 93 466 IPR004000 -
Psa4g2602 470 Gene3D Actin; Chain A, domain 4 282 364 - -
Psa4g2602 470 SMART fbox_2 43 83 IPR001810 GO:0005515
Psa4g2602 470 Gene3D - 135 461 - -
Psa4g2602 470 Pfam Actin 210 456 IPR004000 -
Psa4g2602 470 PANTHER ACTIN-RELATED PROTEIN 8 93 466 - -
Psa4g2602 470 SUPERFAMILY F-box domain 27 95 IPR036047 GO:0005515
Psa4g2602 470 MobiDBLite consensus disorder prediction 1 33 - -
Psa4g2602 470 SMART actin_3 132 467 IPR004000 -
Psa4g2602 470 Gene3D - 239 435 - -
Psa4g2602 470 SUPERFAMILY Actin-like ATPase domain 133 252 IPR043129 -
Psa4g2602 470 Pfam F-box-like 41 82 IPR001810 GO:0005515
Psa4g2602 470 CDD NBD_sugar-kinase_HSP70_actin 135 279 - -
Psa4g2602 470 ProSiteProfiles F-box domain profile. 37 83 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2602 Psa-Chr4 207821574 207829949 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2602 181 453 Cytoskeleton Gene Families AT3G12110 31.449 2.18e-36 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2602 K16616 - gmx:100804254 714.531