Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2592 ATGGATGGGTTCAGGGATCGTGAGATTGACATTTACCCAGAGTATGATAAGTTTCGAGACGGTTATACCAACATTGAAAACTATGGTGATCGAGGATATGTCAAACCTGCTAGGTTTGCAGGGCATGACCGTGACAATTACGCGTATGATGATTATGGCCACAAGTCCCGTGTTTCACATCATCGAAGGGAGGATAGCCATGAGAGGGATTATGATCATGGTCGGCATAGTTATGATTCTGATTATGAAAGAGATGGCAGAAAAGATAGTAATTGGAAGCGACGTGAATCACGCGATCGAGAACGAGACAAGAGATGTCTCAGTAAGGAAAAAGATCCGAGTCCCCAAAGGAAACATGAGCGTTCTCGATCGCGTTCACGATCCCATTCTCGGTCCCGATCACACTCCCGTTCTCATTCTCACTCTCGCTCCCGTTCCCAATCTCGTGGTTATGATGATAATCCAAAATCTAGGTCTCCTCGAGGTCGAAGCCGTAGTCGGAGTTATCGGGAAGACAGCTATGTTGATAGCCGATATGATAGAAGTGAAAGACGCAGGGACCGTGATGATAAACGTCAGCGGGAACATTATTCTGTGGCACCATCTGCAACTGTTGTTGTGAAAGGTCTTTCGCAGAAGACGACTGAAGAAGATCTGTACCAAATCCTTGCGGAATGGGGTCCCCTTCGTCATGTCCGTGTTATAAAGGAGAGACATTCTGGCATCTCCCGTGGATTTGCATTTATTGATTTTCCTTCTGTGGGAGCTGCACAAGGAATGATGGACAAGCTAGGAGATGATGGTCTTGTTGTGGATGGCAGAAAGCTTTTCTTTGAATATAGTAGCAAGCCAACCGGAAGTGCAGGTCCAGACGGAGCTATGAAATCAGGTCATAGTCATAAGAGCATCACAGTACCATCTGATTGGATGTGCATAATATGTAGCTACATCAATTTTGCACGCCGGACTTCTTGCTATCAGTGTAATGAACCACGCACTGATGATGCTCCTGCAGCAGACATTTCTTTATCGAATTCCTCATCTTTAGGAAAGAAAGGTTTGGAGGCAGGTCCAACTCATGTATTGGTTGTCCGGGGATTGGATGAAAATGCGGATGAGGAAATGCTCCGATATGAGTTTTCCAAACATGCTCCAATCAAGGATCTACGTCTCGTTAGAGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTTGTACATTTTTATTCGGTAGAGGATGCTACCAAAGCTCTTGACTTAACAAATGGAACGGCCCTTGAGAAGAATGGACAGATTCTAAGGGTAGCGTATGCAAAAAGCATACTGGGCCCTGGATCAGGAGCGTCAGGAACTTCACAATCAAGCAGTCTTGCAGCTGCAGCTATTGAGGCTGCAACATTTTCCCAGCAGTATGATTCTGTCGGATGGGCTCCCAAAGAATACAATCCAGATGACAAACAATCTAATGGTCCTGAGCAGACTGGTACTGATGCTGGTGCACCACAATCAGGCTTCGTTTGGGATGAAGCATCTGGTTATTACTATGATGCTACTTCTGGGTTTTATTATGATGGGAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACCACCATACTCAACAGTATATCCCTTGCACCGATCAAAATCAGAATAAATCATCTAATAATGAGTCTGAACCTTCTAAGGCACCTGATGGTTCGAGCACTAAAAAAGTAGTGATTTCTGCACCAGCTACTACTGTTGCTTCAAATGAGAAGCCAGCTTCACTGGCAGATGCTGTCCAGGCTGCTGCAGCAGCTGCTTTAGCTGCTGAGAAGAAAGAGAAAGAAAAATCAAAGGAGATAAAACTTGCTTCAAAAAGCAGTATTCTGGCAAATAAGAAAAAAATGAACAATGTGCTGACAATGTGGAAGCAGAGGAGTCATGAGGGACAAGCTACTCGAGTGGCACTGGAGGACAATCAGTTAACTGGTTCTGTTGAGGATAAGTCATATTCTTCTGCACAATCTGCGAAGAACAAGTTAAAAACCGAGGCATCACCAAGGGAAATTAGCGCGTCTAATCTCGGTGGTCACGCAACTGCACAGGTTGCTGCTATTGATTCTCAACCACAGCCACGTCCCTTCAGTAATAGCCTAGGGGGAACTCTGATGGGGGTTATAAGGGGCTCAGGACGAGGGGTTGTTAAATCAGATACTTCTTATTCTGGCTCTACGTCTACCACACCATCTATGTCCGCTTCTTCAGCAAATGTTGATGCCCAGGCATTTGCTACTCCTTTTAAAACAGACGTGTCTTCCCTGGGTTCATATACACCATCTGCGTCTGTTGGAAGTGGACGAAGAAGGTTCTCAGAAATGCCACTCTCTGCTTCAACTCATAAGGAACAATCTCAAACAACAACGTACAGGGACCGGGCAGCTGAGAGAAGAAGTTTGTATGGCTCATCATCTTCAGTTGGCAATGATTTGTCTGACCTTGAAATTGGGGATTCAAGTAAGATTGCTTAA 2529 0.4468 MDGFRDREIDIYPEYDKFRDGYTNIENYGDRGYVKPARFAGHDRDNYAYDDYGHKSRVSHHRREDSHERDYDHGRHSYDSDYERDGRKDSNWKRRESRDRERDKRCLSKEKDPSPQRKHERSRSRSRSHSRSRSHSRSHSHSRSRSQSRGYDDNPKSRSPRGRSRSRSYREDSYVDSRYDRSERRRDRDDKRQREHYSVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERHSGISRGFAFIDFPSVGAAQGMMDKLGDDGLVVDGRKLFFEYSSKPTGSAGPDGAMKSGHSHKSITVPSDWMCIICSYINFARRTSCYQCNEPRTDDAPAADISLSNSSSLGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLTNGTALEKNGQILRVAYAKSILGPGSGASGTSQSSSLAAAAIEAATFSQQYDSVGWAPKEYNPDDKQSNGPEQTGTDAGAPQSGFVWDEASGYYYDATSGFYYDGNTGLYYDGNNGIWYSYDHHTQQYIPCTDQNQNKSSNNESEPSKAPDGSSTKKVVISAPATTVASNEKPASLADAVQAAAAAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQLTGSVEDKSYSSAQSAKNKLKTEASPREISASNLGGHATAQVAAIDSQPQPRPFSNSLGGTLMGVIRGSGRGVVKSDTSYSGSTSTTPSMSASSANVDAQAFATPFKTDVSSLGSYTPSASVGSGRRRFSEMPLSASTHKEQSQTTTYRDRAAERRSLYGSSSSVGNDLSDLEIGDSSKIA* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2592 842 Pfam OCRE domain 502 550 IPR041591 -
Psa4g2592 842 SUPERFAMILY Ran binding protein zinc finger-like 301 335 IPR036443 -
Psa4g2592 842 Gene3D - 301 335 - -
Psa4g2592 842 PANTHER RNA-BINDING PROTEIN 111 821 - -
Psa4g2592 842 ProSiteProfiles Zinc finger RanBP2 type profile. 305 334 IPR001876 -
Psa4g2592 842 MobiDBLite consensus disorder prediction 776 842 - -
Psa4g2592 842 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 360 440 IPR000504 GO:0003723
Psa4g2592 842 PANTHER FI21118P1 111 821 - -
Psa4g2592 842 MobiDBLite consensus disorder prediction 554 571 - -
Psa4g2592 842 MobiDBLite consensus disorder prediction 120 144 - -
Psa4g2592 842 CDD RRM1_RRM2_RBM5_like 358 438 - -
Psa4g2592 842 MobiDBLite consensus disorder prediction 49 197 - -
Psa4g2592 842 SMART rrm1_1 204 279 IPR000504 GO:0003723
Psa4g2592 842 SMART rrm1_1 361 436 IPR000504 GO:0003723
Psa4g2592 842 MobiDBLite consensus disorder prediction 665 688 - -
Psa4g2592 842 MobiDBLite consensus disorder prediction 49 119 - -
Psa4g2592 842 MobiDBLite consensus disorder prediction 735 755 - -
Psa4g2592 842 Gene3D - 341 465 IPR012677 -
Psa4g2592 842 Gene3D - 182 297 IPR012677 -
Psa4g2592 842 CDD OCRE_SUA_like 498 551 IPR035623 -
Psa4g2592 842 MobiDBLite consensus disorder prediction 145 197 - -
Psa4g2592 842 SUPERFAMILY RNA-binding domain, RBD 120 281 IPR035979 GO:0003676
Psa4g2592 842 MobiDBLite consensus disorder prediction 554 578 - -
Psa4g2592 842 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 283 IPR000504 GO:0003723
Psa4g2592 842 SMART zf_4 307 331 IPR001876 -
Psa4g2592 842 ProSitePatterns Zinc finger RanBP2-type signature. 309 328 IPR001876 -
Psa4g2592 842 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 362 427 IPR000504 GO:0003723
Psa4g2592 842 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 264 IPR000504 GO:0003723
Psa4g2592 842 CDD RRM1_RRM2_RBM5_like 201 281 - -
Psa4g2592 842 MobiDBLite consensus disorder prediction 818 832 - -
Psa4g2592 842 SUPERFAMILY RNA-binding domain, RBD 358 445 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2592 Psa-Chr4 207115214 207123439 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2592 202 424 Eukaryotic Initiation Factors Gene Family AT2G36660 25.100 9.18e-09 57.0