Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2566 ATGGAGAACACAAAATCCTCAGATCAAGTTGTTCTCTTCCTTGACCAACAACAAAACCCTAAACCTTCCACAATGGACACTCAAACTCACCACAACAACACCAACAACACCGAACCTCATCAAGACAAACCCAAACACCCCTCAAGAATCAAAACTCTTAACCGTTTAAGCTTCTCCAAACCCAAATCCAGAATCTTTGAATACAACCATCAACCTCGCAACAAACTACCTACCTTCGACGAAGCAGAAGACACTCAACTACCTTCCTACAAAGTCTCTTCCGACGAGGAGGACGACGACTATGAATGGAAGGAACAAGAATCAGATGACGACGATGATGAAGATGATGATCCAAAGCTAAACAAAAAGAAAAAGTTTAAGGTGAAGTGGAGGCTAGTTTTTGAATGGATACTATTTCTAAACATATTAACATGCTTGGTTTGTTCTCTCGTGATAAAAGAAATAAAAAACATGCATTTATTAGGGCTAGAAGTTTGGAGATGGTGTTTAATGGCCATGGTAACATTTAGTGGCCGTTTATTTTCAAGTTGGTTAGTTAGTTTCACGGTTCTCATCATCGAAAGAAACTTCATGCTAAGAGAAAAAGTTTTATACTTCATCTACGGTTTAAGAAACAGCATCCGCAATTGTTTATGGTTAGGTCTTGTTTTATTGTCCTACTGGAGTGTAGTTTTCGACGATGTCCAAAAGAAAAACCATATGTTCCTCAACAAAATGTTTCAAGCACTTGTTGCTGTTTTAATAGGTGCAACAATTTGGTTAGTGAAAATCGTTTTGGTGAAAATGCTAGCTTCATCTTTTCATGTGACAACCTATTTTGATAGAATGAAAGAGAGTGTTTTCCATCATTATGTGTTGGACGCGTTGTCGGGTCCGCCGATGGAATACGGGGAGGAGATATCGAAAGAGCATCATTTGGTGGGATCGAAGACGATGCCAGTGGGGGCGGCGAGGTGGAAGAAGATGAAGAGATTTGGTTCAAGGAGGATTGATATGGAGAAGCTGAGGAAACTTAGTATGGAGAGTAGTGGTTCGGTTTGGAGTGTTAAGAGGCTTGTTAATTATGTTAGGTCTTCTGGTTTGTCGACTATTTCTAGGACTGTTGATGATTTTGGCAATAAAGAGAGTGAGATTAGTAGTGAATGGGAAGCTAGAAGTTGTGCTCAGAGAATTTTTAACAATGTTGCTAAACCTGGTGCCAAGTATATTGAAGAGGTGGATCTCATGAGATATTTGAAGAGGGTTGAGATACATACCATATTCCCACTCTTTGAAGGTGCTCTTGAAACTGGAAAAATTAGCAGATCTTCATTTAGAAATTGGGTGATTCGAGCTTATTATGAAAGAAAAGCCCTAGCACAATCACTTAATGATACAAAAACAGCAGTGCAACAACTTCACAAACTAGCAAGTGCAGTTGTGAGTGTGATAATAATAATAGTCACACTTTTGGTCATGGAAGTGGCTACAATCAAGATAATACTATTTTGTATCACACAAACAGTTTTAATTGGAGTTGCTTTTCAAGGCACTTGCAAAACTGTCTTGGAAGCTATTATCTTTGTTTTCATCATGCACCCTTTCGACATTGGTGACCGTTGTGTCATCGATGGTGTTCAGATGATTGTGGAAGAAATGAATATCTTGACAACGGTGTTTCTTCGATACGACAATGAGAAAATTTACTACCCTAATGCGGTTTTACTCACTAAGCCTATAAGCAATTTTTATCGAAGTCCCGAGATGCGTGATTCAATTGATTTCACCATTGATGTTACGACTCCTATAGAGACTATCATTGCACTGAAGAAATCAATACAAATGTACATTGAGAGCAAGCCAAAGTATTGGAATCCAAAGCACACTGTGATGGCAAAACAAATAGATCAAGTGGACAAATTAAAGCTATGTTTAGGTGTGCAACACACCATTAACCATCAAAACTATGGTGAGAGAAGCACTAGGATATCAGAACTTCTCATGGAAATGAAGAAGATGTTTGAGATTCATGGTATCAAGTATCATCTTCTTCCTCAAGAAATTCATCTCACTCAAATGAATATTGGAGATGGGAGAGTTTTGTTTCAATCATGA 2115 0.3835 MENTKSSDQVVLFLDQQQNPKPSTMDTQTHHNNTNNTEPHQDKPKHPSRIKTLNRLSFSKPKSRIFEYNHQPRNKLPTFDEAEDTQLPSYKVSSDEEDDDYEWKEQESDDDDDEDDDPKLNKKKKFKVKWRLVFEWILFLNILTCLVCSLVIKEIKNMHLLGLEVWRWCLMAMVTFSGRLFSSWLVSFTVLIIERNFMLREKVLYFIYGLRNSIRNCLWLGLVLLSYWSVVFDDVQKKNHMFLNKMFQALVAVLIGATIWLVKIVLVKMLASSFHVTTYFDRMKESVFHHYVLDALSGPPMEYGEEISKEHHLVGSKTMPVGAARWKKMKRFGSRRIDMEKLRKLSMESSGSVWSVKRLVNYVRSSGLSTISRTVDDFGNKESEISSEWEARSCAQRIFNNVAKPGAKYIEEVDLMRYLKRVEIHTIFPLFEGALETGKISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKLASAVVSVIIIIVTLLVMEVATIKIILFCITQTVLIGVAFQGTCKTVLEAIIFVFIMHPFDIGDRCVIDGVQMIVEEMNILTTVFLRYDNEKIYYPNAVLLTKPISNFYRSPEMRDSIDFTIDVTTPIETIIALKKSIQMYIESKPKYWNPKHTVMAKQIDQVDKLKLCLGVQHTINHQNYGERSTRISELLMEMKKMFEIHGIKYHLLPQEIHLTQMNIGDGRVLFQS* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2566 704 MobiDBLite consensus disorder prediction 1 35 - -
Psa4g2566 704 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 4 702 IPR016688 -
Psa4g2566 704 SUPERFAMILY Sm-like ribonucleoproteins 525 583 IPR010920 -
Psa4g2566 704 PIRSF Memb_At2g17000 3 701 IPR016688 -
Psa4g2566 704 Gene3D - 534 583 IPR023408 -
Psa4g2566 704 MobiDBLite consensus disorder prediction 1 118 - -
Psa4g2566 704 Pfam Mechanosensitive ion channel 475 680 IPR006685 GO:0016020|GO:0055085
Psa4g2566 704 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 4 702 - -
Psa4g2566 704 MobiDBLite consensus disorder prediction 95 116 - -
Psa4g2566 704 MobiDBLite consensus disorder prediction 66 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2566 Psa-Chr4 205791586 205795046 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2566 107 694 Mechanosensitive Ion Channel Family AT5G12080 45.591 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2566 K22048 - gmx:100813521 1083.94