Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2555 ATGTATATACTTGACAAGAAATTGAGAATCTTGAAGTCTAAGCTAAAAGATTGGAATAAGAACACTTTCGATAATGTGCAACTTAAGGTTCAAGAAGATGAGGCAAAGTTAAGGAATATTCAGACTGTTATTGAGGTGCAGGTTCTGAATGACCTGCTTTATGAGGAAGAAAGAAGGGCTCATGCTAGTCTTGAAGTAACTCTTAACTTAGAAGAAACTTTTTGGAAGGAGAAAACTAGAATCAACTTGAGTCTTCAAGGAGATAAAAATACAAAATTCTTTCACACCTATGCAAAAGTCAAGAACAAAACCAAGATGATATATTCTCTCTTGATCGACAATCAAGTGGTTTTTGAGAAAGACATCATTGAGAGCCACTACAAGTCCTTATTTAATCAGGTTTGTAACTTACAAGACAATGGCTTAATAGAGGAAACAATACCTTCTTTAGTCAAAGATTCAACCAACAATATCCTCACTAGCTTACCTACTGAAGGAGAAATGCATAAGGCCATTTTAAATCTCAACTCTTATTCTGCTATAGGGCTAGATGGTTTAGGGGGATTTTTTTTACCATCAATATTGGGAGGTGTTGCACCTTCTTGTGCTTATGGTGCAATCTTTAGAAACGAGGCAGCGAAACTCTTGGAAAGCTTTGGAAACTTTTTGGGCGATGACAACGCTTTACTTGCTGAATTGTCTGCGACCATGACTACAGTGGAGCATGCTAGGGAGAGAAAATGGAACAATCTCTGGATCGAATTCGACTCAATTATTATTGTAAAAGCTTTCACTAATTTTAGTCTTGTTCCTTGGAAATCAAAATCTAGATGGTCGAATTATGTATCTATTACTTATGATATGGATTTTTTTGATTACTCAATAATGAAGAGTACAAAAATGGAGCATTTGTTAAGTCTTGTAATATGCACACTGCTATTAGTAAAATCAGCTGAAGGGGTTGCTGTGCCAATCACTTATGTTCAAAGTGCAGTACCAAAAGGAGCTGTTTGTTTGGATGGGAGTCCACCGGCTTACCACTTTGATAAGGGATTTGATGCCGGAATTGATAACTGGATTGTTCACTTCGTGGGAGGAGGATGGTGTAACAATGCCTCTACTTGCCTTGACCGTAGAGACACCCCATTAGGATCGTCGAAGAAAATGGATACAACACTTTCCTTTTCGGGTTTTTTTAGTAATGGAAAAAAGTTTAATCCAGATTTCTACAATTGGAACAGAATCAAGGTTAGGTATTGTGACGGTTCATCATTTACCGGTGATGTTGAAGCTGTTGATCCAGCAACCAATTTGCACTATAGAGGAGGAAGAATATTTGTTGCTGTCATTGAGGATTTACTAGCAAAAGGAATGAAAAATGCTAAAAATGCAATTCTATCTGGATGTTCTGCTGGAGGATTGACTTCTATTTTACAATGCGATCGCTTTAGAACTTTACTTCCTGCAGCAGCTAAAGTTAAATGCGTCTCAGATGCTGGTTATTTTATCAATGTAAAAGCTGTCTCTGGAGCACAACACATTGAACAATTCTACAGCCAAGTCGTTCAAACACATGCCTCGGCAAAGAATTTGCCTTCATCTTGCACATCAAGACTTTCACCAGGGCTGTGTTTTTTCCCGCAAAATGTGGTCGCACAAATCAGTACACCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAGATTAAGAATATTTTGGCACCCGGTGTTGCTGATCCACATGGCACTTGGCGTAGCTGCAAGCTCGATATAAAAGATTGCTCATCTAATCAATTAACCACAATGCAAGGTTTCAGGACAGAATTCTTAAAGGCAATTAGTGTGGTTAGTAATTCTCCATCTAAAGGAATGTTTATCGACGGTTGCTATTCCCACTGCCAAACTGGAATACAGGAAACATGGATGAGAAATGACTCTCCACTCCTTGTCAATACAACAATAGCAAAGGCTGTGGGAGATTGGTATTTTGAGAGAAAAGGTTTTCAACAGATAGATTGTTCTTATCCTTGCAACCCTACTTGTCATAACCGTGTCTTTGAATAG 2067 0.3822 MYILDKKLRILKSKLKDWNKNTFDNVQLKVQEDEAKLRNIQTVIEVQVLNDLLYEEERRAHASLEVTLNLEETFWKEKTRINLSLQGDKNTKFFHTYAKVKNKTKMIYSLLIDNQVVFEKDIIESHYKSLFNQVCNLQDNGLIEETIPSLVKDSTNNILTSLPTEGEMHKAILNLNSYSAIGLDGLGGFFLPSILGGVAPSCAYGAIFRNEAAKLLESFGNFLGDDNALLAELSATMTTVEHARERKWNNLWIEFDSIIIVKAFTNFSLVPWKSKSRWSNYVSITYDMDFFDYSIMKSTKMEHLLSLVICTLLLVKSAEGVAVPITYVQSAVPKGAVCLDGSPPAYHFDKGFDAGIDNWIVHFVGGGWCNNASTCLDRRDTPLGSSKKMDTTLSFSGFFSNGKKFNPDFYNWNRIKVRYCDGSSFTGDVEAVDPATNLHYRGGRIFVAVIEDLLAKGMKNAKNAILSGCSAGGLTSILQCDRFRTLLPAAAKVKCVSDAGYFINVKAVSGAQHIEQFYSQVVQTHASAKNLPSSCTSRLSPGLCFFPQNVVAQISTPIFFVNAAYDSWQIKNILAPGVADPHGTWRSCKLDIKDCSSNQLTTMQGFRTEFLKAISVVSNSPSKGMFIDGCYSHCQTGIQETWMRNDSPLLVNTTIAKAVGDWYFERKGFQQIDCSYPCNPTCHNRVFE* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2555 688 Gene3D - 195 304 IPR036397 GO:0003676
Psa4g2555 688 Pfam Reverse transcriptase-like 203 267 IPR002156 GO:0003676|GO:0004523
Psa4g2555 688 PANTHER NOTUM-RELATED 298 687 IPR004963 GO:0016787
Psa4g2555 688 Pfam Pectinacetylesterase 317 667 IPR004963 GO:0016787
Psa4g2555 688 CDD RNase_H_like 202 273 IPR044730 -
Psa4g2555 688 PANTHER PECTIN ACETYLESTERASE 298 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2555 Psa-Chr4 205152258 205160488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2555 300 687 Carbohydrate Esterase AT4G19420 56.974 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2555 K19882 - gmx:100781246 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3270 2 370539323 370542587 Psa4g2555 4 205152258 205160488 PCT