Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2551 ATGGGTTTAGGAGTATTTGGATCTGTTCTGGTTTTGACATTTTTGTTCAAGCATTTAGCTTCTCAACAACCAAACACTGATGAGTTTTTTGTATCTGAGTTTTTGAAGAAAATGGGTTTATCATCATCCTCAAAAGTTTATGACTTTTCATCTTCTGTTTGTTCATGGAAAGGTGTTTTCTGTGATGCAAATAAACAACATGTTATTGAGTTGAGTTTTTCTGGTATTGGACTCACTGGTCCTATACCTGAAACAACTTTAGGAAAACTCAACAATCTTCAATCTTTGGATCTTAGCAGAAACAAAATCACTGCTTTGCCTTCTGATTTTTGGAGTTTAACCTCTCTCAAGAGGCTTAACCTTTCTTCCAATCAGATTTCAGGTTCTTTGACTAACAACATTGGAAACTTTGGTTTACTTGAAACCATTGATTTGTCAAAAAACAGTTTCTCTGAGGAAATTCCTGAAGCTTTGAGTTCTCTTAAGAGTTTGAAAGTTCTCAAACTTGCACACAACATGTTTGTTAAAAGTATTCCTTCAGGGATTCTCAAATGTCAGTCTTTAGTTTCAGTTGATCTTTCGGCAAATCAGTTGAATGGAACACTTCCACATGGTTTTGGTGATGCTTTTCCTAATCTTAGGACATTGAACCTTGCAGAGAATGATATCTTTGGTGGTGTCTCAGATTTTTCAGGGTTCTGTTACAGATGTTTTGTGTTAAAGTTGGAGGTTTTGGACCTTAGCAGAAACCAATTTCAAGGTCACATTTCTCAGGTAAACTACTACAATTGGTATCATTTAGTTTATCTTGATTTGTCGGAGAATCGGCTTAGTGGTGAAATTTTCCAAAACTTTAATGGCACGCCGAATTTAAAGCACCTTAATCTTGCATGCAATAGATTTTCAACACAGAAATTCCCACAGATTGAAATGCTATTAGGATTGGAATATCTGAACTTGTCGAAAACTAGTCTTGTTGGTCACATTCCCGACGGAATCTCGCAGCTTGGTAATTTGAATGCACTTGATCTTTCTATGAATCATCTTGATGGGAGAATTCCTTTACTTGTGAATAAACACCTCCAAGTTATTGACCTTTCGCACAACAATTTGAGTGGACCGGTACCTCAAATTGTCTTAAAGAATCTCCCAAAGACGAAGAATTACAACTTCTCTTACAATAACTTAACCCTCTGTGCTTCAGAAATCAGACCTGAGATCCTTCAAACATATTTCTACGGGTCGGTTAACAGTTGTCCAATCGCTGCGAATCCGGGTCTTTTCAAAAGAAGAAGAAGAGACACTAACCACAAGGGAATGAAGCTAGCTCTTGCATTAACCCTCTCAATGGTATTAGCACTTGCCGGTGTTTTGTTTCTAGCATTCGGTTGCAGAAGGAAACAGAAAATGTGGGAAGTGAAACAAAGTTCATACAGAGAAGAACAGAATGTCTCCGGTCCATTTTCGTTCCAAACTGATTCAACAACGTGGGTTGCTGATGTCAAACAAGCAACATCAGTTCCAGTAGTAATCTTTGAGAAGCCGTTGTTAAATATAACTTTTGCAGACCTCTTATCTGCAACTTCGAATTTCGATAGAGGTACCCTCTTGGCCGAAGGAAAGTTTGGACCTGTTTATAGAGGCTTTCTACCTGGAAATATCCATGTAGCAGTCAAAGTTTTGGCTGTTGGTTCTACATTAACAGATGAAGAAGCCGCAAGAGAGCTTGAGTTTCTCGGTAGAATCAAGCACCCTAATCTAGTTCCTTTAACCGGTTATTGTTTAGCCGGTGATCAAAGGATTGCTATATATGATTACATGGAGAATGGGAACTTGCAAAATCTTCTCTATGATTTGCCGCTTGGGGTTCAAAGCACTGATGATTGGAGCACCGACACATGGGAAGAAGCTGCTGACAGTAATGGAATTCAGAATGTTGGTTCTGAAGGATTACTCACAACTTGGAGATTTCGACACAAAATCGCGCTTGGAACTGCAAGAGCATTGGCATTTCTGCATCACGGATGTTCTCCTCCCATAACTCATAGAGCTGTTAAAGCTAGCAGTGTTTATTTGGATTATGATTTGGAGCCAAGGTTGTCTGATTTTGGTCTTGCCAAGATTTTCGGAAGTGGTTTGGACGAAGAGATTGCTCGTGGTTCGCCCGGTTATGTTCCGCCGGAGTTTTCTCAACCAGAATTTGAGTCACCAACACCGAAATCTGATGTATATTGTTTTGGTGTTGTTCTGTTTGAGCTATTAACCGGAAAGAAACCGGTTGAAGATGATTATAGTGATGACAAAGAAGCAACGAGTTTGGTTAGTTGGGCTAGAGGACTTGTAAGGAAGAATCAAACTTCAAGAGCTATTGATCCGAAAATTCGCGATACGGGATTGGACGAACAAATGGAGGAGGCTATAAAGATTGGATATCTATGCACAGCTGATTTACCTTTCAAGAGACCAACCATGCAGCAGATAGTTGGACTTCTAAAGGATATTGAACCTACAACTAACTAG 2520 0.3921 MGLGVFGSVLVLTFLFKHLASQQPNTDEFFVSEFLKKMGLSSSSKVYDFSSSVCSWKGVFCDANKQHVIELSFSGIGLTGPIPETTLGKLNNLQSLDLSRNKITALPSDFWSLTSLKRLNLSSNQISGSLTNNIGNFGLLETIDLSKNSFSEEIPEALSSLKSLKVLKLAHNMFVKSIPSGILKCQSLVSVDLSANQLNGTLPHGFGDAFPNLRTLNLAENDIFGGVSDFSGFCYRCFVLKLEVLDLSRNQFQGHISQVNYYNWYHLVYLDLSENRLSGEIFQNFNGTPNLKHLNLACNRFSTQKFPQIEMLLGLEYLNLSKTSLVGHIPDGISQLGNLNALDLSMNHLDGRIPLLVNKHLQVIDLSHNNLSGPVPQIVLKNLPKTKNYNFSYNNLTLCASEIRPEILQTYFYGSVNSCPIAANPGLFKRRRRDTNHKGMKLALALTLSMVLALAGVLFLAFGCRRKQKMWEVKQSSYREEQNVSGPFSFQTDSTTWVADVKQATSVPVVIFEKPLLNITFADLLSATSNFDRGTLLAEGKFGPVYRGFLPGNIHVAVKVLAVGSTLTDEEAARELEFLGRIKHPNLVPLTGYCLAGDQRIAIYDYMENGNLQNLLYDLPLGVQSTDDWSTDTWEEAADSNGIQNVGSEGLLTTWRFRHKIALGTARALAFLHHGCSPPITHRAVKASSVYLDYDLEPRLSDFGLAKIFGSGLDEEIARGSPGYVPPEFSQPEFESPTPKSDVYCFGVVLFELLTGKKPVEDDYSDDKEATSLVSWARGLVRKNQTSRAIDPKIRDTGLDEQMEEAIKIGYLCTADLPFKRPTMQQIVGLLKDIEPTTN* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2551 839 ProSiteProfiles Leucine-rich repeat profile. 92 113 IPR001611 GO:0005515
Psa4g2551 839 Gene3D Transferase(Phosphotransferase) domain 1 607 839 - -
Psa4g2551 839 Gene3D Ribonuclease Inhibitor 179 234 IPR032675 -
Psa4g2551 839 Gene3D Ribonuclease Inhibitor 235 307 IPR032675 -
Psa4g2551 839 Pfam Leucine Rich repeat 358 373 IPR001611 GO:0005515
Psa4g2551 839 ProSiteProfiles Protein kinase domain profile. 531 838 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g2551 839 SUPERFAMILY L domain-like 42 401 - -
Psa4g2551 839 Gene3D Ribonuclease Inhibitor 308 407 IPR032675 -
Psa4g2551 839 SUPERFAMILY Protein kinase-like (PK-like) 508 831 IPR011009 -
Psa4g2551 839 Gene3D Ribonuclease Inhibitor 31 178 IPR032675 -
Psa4g2551 839 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 836 - -
Psa4g2551 839 Pfam Protein kinase domain 535 828 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g2551 839 Gene3D Phosphorylase Kinase; domain 1 491 606 - -
Psa4g2551 839 PRINTS Leucine-rich repeat signature 93 106 - -
Psa4g2551 839 PRINTS Leucine-rich repeat signature 336 349 - -
Psa4g2551 839 PANTHER CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATED 1 836 - -
Psa4g2551 839 SMART LRR_typ_2 161 185 IPR003591 -
Psa4g2551 839 SMART LRR_typ_2 312 336 IPR003591 -
Psa4g2551 839 SMART LRR_typ_2 90 112 IPR003591 -
Psa4g2551 839 SMART LRR_typ_2 113 137 IPR003591 -
Psa4g2551 839 Pfam Leucine rich repeat 241 300 IPR001611 GO:0005515
Psa4g2551 839 Pfam Leucine rich repeat 82 126 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2551 Psa-Chr4 204796151 204798716 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2551 70 834 Receptor kinase-like Gene Family AT5G07280 32.360 2.47e-105 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Psa4g2551 Pkinase 1.2e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2551 - - gmx:100797738 1338.94