Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2548 ATGGCTGAGCACCGCGTCTCCGAACCTCTCCCAGTGGGACCCACTCAGCTTGGAAATAACGATGAAAAAGACCAACACGAAAAAGAACGAGTCGGTGAATCTCCACGTGTCACCGAGTCTAAACAAAACGATTCAGCGAGTTCTATTGAACACTCGGTAGAGCGAAATTCAGAAACCCTAATTGTTCCTCCATCTTCGATTTTGCAGAAACAGAGTTTCGACGCAGATTTGCAGGGGATCCCTAATTCGCTGAATTCGTGTGATAAAGCTGAAAATAAGGAAACAGTTGGACCTCCTGAAAAGGAAATTACTGCAAGTGAAGCAGCCCCGACACCTCCAACTCCGACTGAAAATCAGCTTGCAATGATTCTGTATTCAACTCCACTGACTGAAATACCACCAAATTCTGTTACAAAATCTTTTTCACCTGTTTCTATTTCAACCATACAAATATATAAAATGTCTCCTCCAAGTGTTAGTAACACACCTGTACCAGTAGTTGACAAAAAATATCCTTCTGGCGGTAAAGCCTTATCTTCAGTTTCTGTTGCGAGGACATCAGCATCTGATGGATACAACTGGCGGAAATATGGTCAGAAGCAAGTTAAGAGTCCTACTACAGGTTCTCGAAGCTATTACAGGTGTACTCAATCAAACTGTTGTGCTAAGAAGATTGAATGCTGGGATCATTCAGGTCATGTGATAGAGACTGTTTATAAAAGTGGGCACAGTCATGATCCCCCGCGGAAGACTCTTTCCCTTAGGGAAAGTAAGTTTGCATCTCCCAAAGAACCTACTGCAGAGAACAATGTTTTAGTGAAGTATGTCAATGTTCTGAAAGATTCTGATCCGTCCACATCTTCCAAAGCTCAAGAAGCACCTTATAGTGCTGACAAGGAACCACAAAACTCGTCTAATATCAATGGTAATGGTAAAGTTATTTTGAAGGAGGAACATCTAGACAAGCCAGAGCCAAAACGAAGAAAGGAGAAAGGCGACTTAATTCAACCAGATTCTCCTGTAAAACCTGGAAAGAAACCCAAGTTTGTTGTACATGCAGCCGGAGATGTGGGGATATCAGGTGATGGATACCGATGGCGCAAGTATGGGCAGAAAATGGTGAAGGGTAACCCACATCCCAGAAACTACTACAGATGCACTTCTGCCGGATGTCCTGTCCGGAAGCACATCGAGACAGCCGTAGACAACTCAGATGCTGTCATCATAACTTACAAGGGTGTACATGATCACGACACTCCTGTGCCGAAGAAACGACACGGCCCACCAAGTGCTCCTCTCGTGGCTGCTGCAGCACCTGCCTCCATGAATAATTTGCAGTTGATTAAACCAGGCTCGCCTCAGCAAAACCAGAAAATTTCTACTCAATGGTCAGTGGACACAGAAGGAGAACTAACTGGGGAAGCGTTGGAGCTTGGTGGCGAGAAAGCAATAGAGTCAGCTCGAACTCTTCTGAGTATAGGTTTTGAAATTAAGCCTTGCTGA 1503 0.4438 MAEHRVSEPLPVGPTQLGNNDEKDQHEKERVGESPRVTESKQNDSASSIEHSVERNSETLIVPPSSILQKQSFDADLQGIPNSLNSCDKAENKETVGPPEKEITASEAAPTPPTPTENQLAMILYSTPLTEIPPNSVTKSFSPVSISTIQIYKMSPPSVSNTPVPVVDKKYPSGGKALSSVSVARTSASDGYNWRKYGQKQVKSPTTGSRSYYRCTQSNCCAKKIECWDHSGHVIETVYKSGHSHDPPRKTLSLRESKFASPKEPTAENNVLVKYVNVLKDSDPSTSSKAQEAPYSADKEPQNSSNINGNGKVILKEEHLDKPEPKRRKEKGDLIQPDSPVKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNSDAVIITYKGVHDHDTPVPKKRHGPPSAPLVAAAAPASMNNLQLIKPGSPQQNQKISTQWSVDTEGELTGEALELGGEKAIESARTLLSIGFEIKPC* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2548 500 SMART WRKY_cls 360 419 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa4g2548 500 SMART WRKY_cls 188 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa4g2548 500 MobiDBLite consensus disorder prediction 38 65 - -
Psa4g2548 500 MobiDBLite consensus disorder prediction 282 311 - -
Psa4g2548 500 PANTHER WRKY TRANSCRIPTION FACTOR 32-RELATED 1 498 - -
Psa4g2548 500 MobiDBLite consensus disorder prediction 282 347 - -
Psa4g2548 500 ProSiteProfiles WRKY domain profile. 183 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa4g2548 500 MobiDBLite consensus disorder prediction 1 65 - -
Psa4g2548 500 ProSiteProfiles WRKY domain profile. 355 420 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa4g2548 500 MobiDBLite consensus disorder prediction 79 115 - -
Psa4g2548 500 Pfam WRKY DNA -binding domain 190 245 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa4g2548 500 Pfam WRKY DNA -binding domain 362 417 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa4g2548 500 Gene3D WRKY domain 345 421 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa4g2548 500 Gene3D WRKY domain 175 249 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa4g2548 500 MobiDBLite consensus disorder prediction 20 37 - -
Psa4g2548 500 SUPERFAMILY WRKY DNA-binding domain 356 420 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa4g2548 500 MobiDBLite consensus disorder prediction 314 336 - -
Psa4g2548 500 SUPERFAMILY WRKY DNA-binding domain 185 248 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa4g2548 500 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 498 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2548 Psa-Chr4 204676520 204680116 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2548 178 500 WRKY Transcription Factor Family AT4G30935 60.736 2.28e-124 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa4g2548 WRKY 2.3e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2548 - - gmx:100127377 618.231