Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2539 ATGGGCGATAATGGTGATGATCAACCTTTGTTCAGTAGCAAATTTGGTGTGTTACTAATTGCCATGGGCTCAGCTAGTTTTGTAGTAACAATGTACCATCTCATTGTCATTTGCTGCCAAAACTCATCTCAACAAGCGCGGCGGCACGAGCAACCGACGACACAAACTCCGAGCGCCGCCGAAGAAGGAGGTTTCGTGTCACATCAAATTCCATCTCACAAATATGAGAAGAAAAATAATGAAGATGAATGTGTTACTTGTGCGGTATGTTTAGGAGATTTTGAGGAAGGTGAAGAGTTGAGGACTATGCCTTCTTGTATGCACTCTTTTCATTTACCTTGCATAGATATGTGGCTTCATTCACATCCTAATTGTCCCGTTTGCCGCGCCGATGCCACGCCTTCCCCGGTGATGCCTTGCCGGTCACCGGAGGTTGGATCAGTCGGGGTGAATGTAGATCAAGGCAGAAATATGATTCAAATTATTGTTCTCGGATAA 498 0.4498 MGDNGDDQPLFSSKFGVLLIAMGSASFVVTMYHLIVICCQNSSQQARRHEQPTTQTPSAAEEGGFVSHQIPSHKYEKKNNEDECVTCAVCLGDFEEGEELRTMPSCMHSFHLPCIDMWLHSHPNCPVCRADATPSPVMPCRSPEVGSVGVNVDQGRNMIQIIVLG* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2539 165 SMART ring_2 87 128 IPR001841 -
Psa4g2539 165 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Psa4g2539 165 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 2 138 - -
Psa4g2539 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 136 IPR013083 -
Psa4g2539 165 SUPERFAMILY RING/U-box 69 135 - -
Psa4g2539 165 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 138 IPR044675 -
Psa4g2539 165 Pfam Ring finger domain 86 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2539 Psa-Chr4 204119368 204120299 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2539 17 133 C3H Transcription Factor Family AT5G17600 36.296 3.43e-21 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2539 - - lja:Lj0g3v0111029.1 176.022