Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2535 ATGAATGAAGGATTCATGGCGTCGAATGAGAATGTTCCTGTTCGCGAGTTTTCCGCAAATGGAAACTGCATGAACACAACGGAAGTTGAGGCTATGCTTGATGAAGGAAATATTCAAGATGCTGAAACTGCATTGCGAGATGGCTTATCTCTTAATTCTGAGGAAGCGAAGGCCCTACTCGGAAAATTTGAGTATCAAAGAGGTAATTTTGAGGGTGCTCTTCGTGTGTTTGATGGGATCGATTTTAGAGAAGCCATACAGCGACTGCAAACTTCCATTTCGGAAAAGCCACCCGTCAAGAAAGGTCCCTCTCGCGCTGAATCACCTTCTTCAGTATCTCAGCATGCTGCTAGTATGGTGCTTGAAGCCATCTACTTAAAAGCCAAGTCTCTACAAAAACAAGGAAAATTTAATGAAGCTGCTGATGAATGCAATCAAGTTCTAGAGGCTGTTGAGAAGATATTTGGTCAGGGTATACCTGATACTCAAGTGGACAATAGATTGCAGGAGATTGTAAGCTGTGCAGTAGAGCTTCTTCCCGAGCTTTGGAAACAAGCCGGTTGCTACAACGAGGCAATAACTGCTTATAGGCACGCCCTTCTCAGTCAATGGAACCTTGATAATGATTGCTGTGCGAGGATTCAGAAAGCGTTTGCGGTATTTTTGCTCTACAGCGGGGTGGAGGCGAGTCCACCTAGTTTTTCCGTTCAGATTGAAGGGTCTTATGTGCCGAAAAATAATCTGGAAGAGGCGATTCTTCTTATTATGATTCTTTTAAGGAAGTTTAGCCTAGGCAAGATAAAGTGGGATCCTTCAATTATGGAACACCTAATTTTTGCACTTTCAGCATGTGGCGAAACATCTATTTTGGCGAAACAGTTTGAAGATTTGATTCCTGGTGTATATCATCGTATTGACCGTTGGAATTCTTTAGCTCTATGTCTTAGCGCGGATGGACAAAATAAAAGTGCTTTGAATCTGCTAAGGAAGTCTTTGCATAAACATGAGCGACCGAACGATGTTATAGCGTTATTATTGGCCGCAAGGATTTGCAGTGAGGATCCTCATCTTGCAGCGGAGGGAGCAGGGTATGCACAGAGAGCAATTGATAAAGCTCAGGGCTTAAACGAGCATTTGAAAGGCGTTGGTCTTCGGATGCTTGGACTTTGCCTTGGAAAGCAAGCTAAGGTTGCTTCCTCCGATTTCGAGAGGTCTATGCTTCAGTCAAAAGCTTTGCAATCATTAGAGGAGGCCCTTAAATTAGAGCAAAACAATTTCGATCTAATCTTCGAATTGGCTATTCAATATGCCCTGCACCGAAACTTGGCTGTTGCTTTACGTTACGCCAAGCAGTTCTTCGACAAAACTGGTGGCTCCAAATTGAAAGGTTGGAGATTGCTTTCTCTGGTTTTGTCTGCACAGAGAAGATTTTCAGAGGCCGAAATGGTGACTGATGCTGCTATAGATGAAACCGCAAAATGGGAGCAGGGGACTCTCTTCAGGATAAAAGCCAAACTGAAGATCGCCGAGCTACGACCAATGGATGCTATTGAGATTTACCGGTACCTTCTCGCATTGGTTCAAGCCCAGAAGAAATCCACTGGAGCTCAAAAGCTTAGTTCACAGGATGCGGATGATCAAATAAACGAGTTTGATGTTTGGCACGGTCTAGCAAATTTATATGCAAGCCTTTCGCATTGGAAGGATGCTGAAATCTGTCTGCAAAAGGCTAGAGAGTTGAAGCAATACTCTGCAGCAACAATACAAACTGAAGGTGTCGTGTTTGACGGTCGTGGACAAACCAACGAAGCTCTTGCAGCTGCTGCTAGTGCTGTCCAAATTGAACCAAACCATGTTCCAAGCAAGATCTTGATGGCTTCTCTGATGCTTAAAAATGGTTCCAAAGCATTTCCTGTTTGTAGGAGCTTACTTTCTGATGCACTTAGAATAGAACCAACTAACCGAAATGCTTGGTATAACCTCGGATTAACTCACAGGGATGATGGTCGGATAGGTGATGCTGCGGACTGCTTCCAAGCAGCTTCAATGCTTGAAGAATCTGATCCCATTGAAAGCTTTAGCTCTTTGCTTTGA 2094 0.437 MNEGFMASNENVPVREFSANGNCMNTTEVEAMLDEGNIQDAETALRDGLSLNSEEAKALLGKFEYQRGNFEGALRVFDGIDFREAIQRLQTSISEKPPVKKGPSRAESPSSVSQHAASMVLEAIYLKAKSLQKQGKFNEAADECNQVLEAVEKIFGQGIPDTQVDNRLQEIVSCAVELLPELWKQAGCYNEAITAYRHALLSQWNLDNDCCARIQKAFAVFLLYSGVEASPPSFSVQIEGSYVPKNNLEEAILLIMILLRKFSLGKIKWDPSIMEHLIFALSACGETSILAKQFEDLIPGVYHRIDRWNSLALCLSADGQNKSALNLLRKSLHKHERPNDVIALLLAARICSEDPHLAAEGAGYAQRAIDKAQGLNEHLKGVGLRMLGLCLGKQAKVASSDFERSMLQSKALQSLEEALKLEQNNFDLIFELAIQYALHRNLAVALRYAKQFFDKTGGSKLKGWRLLSLVLSAQRRFSEAEMVTDAAIDETAKWEQGTLFRIKAKLKIAELRPMDAIEIYRYLLALVQAQKKSTGAQKLSSQDADDQINEFDVWHGLANLYASLSHWKDAEICLQKARELKQYSAATIQTEGVVFDGRGQTNEALAAAASAVQIEPNHVPSKILMASLMLKNGSKAFPVCRSLLSDALRIEPTNRNAWYNLGLTHRDDGRIGDAADCFQAASMLEESDPIESFSSLL* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2535 697 MobiDBLite consensus disorder prediction 93 112 - -
Psa4g2535 697 ProSiteProfiles TPR repeat profile. 655 688 IPR019734 GO:0005515
Psa4g2535 697 PANTHER CALMODULIN-BINDING PROTEIN 9 696 - -
Psa4g2535 697 Gene3D Tetratricopeptide repeat domain 501 693 IPR011990 GO:0005515
Psa4g2535 697 SMART tpr_5 551 584 IPR019734 GO:0005515
Psa4g2535 697 SMART tpr_5 121 154 IPR019734 GO:0005515
Psa4g2535 697 SMART tpr_5 305 338 IPR019734 GO:0005515
Psa4g2535 697 SMART tpr_5 585 618 IPR019734 GO:0005515
Psa4g2535 697 SMART tpr_5 655 688 IPR019734 GO:0005515
Psa4g2535 697 Pfam Tetratricopeptide repeat 657 688 IPR019734 GO:0005515
Psa4g2535 697 Gene3D Tetratricopeptide repeat domain 26 207 IPR011990 GO:0005515
Psa4g2535 697 SUPERFAMILY TPR-like 121 446 IPR011990 GO:0005515
Psa4g2535 697 PANTHER PROTEIN NPG1 9 696 IPR043376 -
Psa4g2535 697 Gene3D Tetratricopeptide repeat domain 212 494 IPR011990 GO:0005515
Psa4g2535 697 SUPERFAMILY TPR-like 515 685 IPR011990 GO:0005515
Psa4g2535 697 SUPERFAMILY TPR-like 52 201 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2535 Psa-Chr4 204078219 204081731 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2535 5 697 Calmodulin-binding Proteins AT2G43040 67.862 0.0 939
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2535 K21843 - gmx:100811897 1110.13