Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2531 ATGGGATCCAATAGTAGCAAAGCCACTTCCTCTTCAACTTCGTCTTCTTCAAGGAATTTCAGGAAGAGGAGTCGCTCTAAGGCTCTCAGAGGGTTTCGTTCTTATTGTCTTGGAACTAGTTCTGGATCTCGAGACAGTGATTATGAAGACCAGGTTTGTGATCAGAATAAAGTAGATGGCAGTGATGTTACATATGCTGATGGCAATCTATCTGACTCAGATGAGGTGAAGTCGAAATCTTTAAGAAAGGTTAAAGCTGGTGAAGGTGACAATACTTGTATGCCTAACATCAACCTTGATGAGTGGAGTGAAACAAGGATCCGCGGCACTTCATATGGAAATCGTACTAGCTCCGTTCATGCTTCTTCAACTCATTCGTTGAATAGAACAAGTCGATTCCTCTCTCGACTTAGGAGATTTACTAGTTCAAGGTCATCAAGGCCTTGTCCGGTTTCTTCTCCAAGTTTCTCAATATTCGACAATCATGATGATGCATCAGGATCTGGTTTACCTTGTTGTAACATGCAGAGAAATTCCAGTTATGGCATTGGGGCAAGAGATGAGTTGGATGTGAACTTATTTTCTTCGAGAATTCAAGCAGAGACGGATACTATTGAGACTAGACATATAGATCGACGAAATAGAGTTCGAGAACCAGTTGATCATAATGTTCGCTTTAGTCGAACTTTAAGCGTTGGAAGGCTTCGTGACAGAGTTCTTCGCCGATCAACATTTTCTGACCTTACCTCATTCCCTCTACAACAAGAGAGAGAGCTGAGAGATGATAGTCAGAATACTCGAAGGCAAGCAGTGGAGCGGGATTCAAGAGTTTCACCATTAGATCTTAGTGCTATTAGTTCTTCTACATCTAGTATGTCTAACTCCATATTTAGCAATCAAAACTATGAAGTCGAGACCTCACAATTGCGAGACGGTGGGTATCAGGATCTAATGGAGCATAGATCCAATTTCCTTGAACGAGGAAGAAGAATACGATCACAGGCCCGTTCTCTTCAGAGATTGAGTAGCCGGTTTGAAAATCAGTCCGCACATGGGAGATCATGCATCTTGTCTGGTCAACATAGAAGTGGTCATTGTATGTGCCGATTCAGAAATCGTGACACGAATTCGAATGACGATACTGGTGCTAGAGCTAGCATATCTAGAATTGTTGTACTTGCAGAAGCGTTATTTGAGGTTCTGGATGAAATCCACCAGCAATCTGTGGTTTTATCTTCCCATCCTTCCGCGTCTTCTCTTGGATGCGTTCCTGCACCTATCAACGTCGTGGAGTCTTTGCCTGTCAAGTTTTACGAGAAGTTGCATAAACATCAAGAAGATGCTACACAATGTTATATATGCCTTGTGGAGTACGAGGACGGAGACAGCGTGCGAGTTCTGCCTTGCCATCATGAATTTCATAGAACATGTATAGACAAGTGGTTGAAGGAGATTCACAGGGTATGCCCGCTATGTCGGGGGAACATCTGCGTTTCTGATTCAGAACTATAG 1512 0.4286 MGSNSSKATSSSTSSSSRNFRKRSRSKALRGFRSYCLGTSSGSRDSDYEDQVCDQNKVDGSDVTYADGNLSDSDEVKSKSLRKVKAGEGDNTCMPNINLDEWSETRIRGTSYGNRTSSVHASSTHSLNRTSRFLSRLRRFTSSRSSRPCPVSSPSFSIFDNHDDASGSGLPCCNMQRNSSYGIGARDELDVNLFSSRIQAETDTIETRHIDRRNRVREPVDHNVRFSRTLSVGRLRDRVLRRSTFSDLTSFPLQQERELRDDSQNTRRQAVERDSRVSPLDLSAISSSTSSMSNSIFSNQNYEVETSQLRDGGYQDLMEHRSNFLERGRRIRSQARSLQRLSSRFENQSAHGRSCILSGQHRSGHCMCRFRNRDTNSNDDTGARASISRIVVLAEALFEVLDEIHQQSVVLSSHPSASSLGCVPAPINVVESLPVKFYEKLHKHQEDATQCYICLVEYEDGDSVRVLPCHHEFHRTCIDKWLKEIHRVCPLCRGNICVSDSEL* 504
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2531 503 MobiDBLite consensus disorder prediction 1 19 - -
Psa4g2531 503 MobiDBLite consensus disorder prediction 256 279 - -
Psa4g2531 503 MobiDBLite consensus disorder prediction 1 26 - -
Psa4g2531 503 ProSiteProfiles Zinc finger RING-type profile. 451 493 IPR001841 -
Psa4g2531 503 MobiDBLite consensus disorder prediction 256 275 - -
Psa4g2531 503 CDD RING-H2_PA-TM-RING 450 493 - -
Psa4g2531 503 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 164 - -
Psa4g2531 503 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 164 501 - -
Psa4g2531 503 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 164 - -
Psa4g2531 503 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 164 501 - -
Psa4g2531 503 SUPERFAMILY RING/U-box 429 498 - -
Psa4g2531 503 SMART ring_2 451 492 IPR001841 -
Psa4g2531 503 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 417 498 IPR013083 -
Psa4g2531 503 Pfam Ring finger domain 450 493 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Psa4g2531 Psa-Chr4 203600948 203604080 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2531 140 500 C3H Transcription Factor Family AT5G45290 53.659 6.86e-106 325
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2531 4 203600948 203604080 Psa4g2531 4 203600948 203604080 ECH