Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa4g2531 | ATGGGATCCAATAGTAGCAAAGCCACTTCCTCTTCAACTTCGTCTTCTTCAAGGAATTTCAGGAAGAGGAGTCGCTCTAAGGCTCTCAGAGGGTTTCGTTCTTATTGTCTTGGAACTAGTTCTGGATCTCGAGACAGTGATTATGAAGACCAGGTTTGTGATCAGAATAAAGTAGATGGCAGTGATGTTACATATGCTGATGGCAATCTATCTGACTCAGATGAGGTGAAGTCGAAATCTTTAAGAAAGGTTAAAGCTGGTGAAGGTGACAATACTTGTATGCCTAACATCAACCTTGATGAGTGGAGTGAAACAAGGATCCGCGGCACTTCATATGGAAATCGTACTAGCTCCGTTCATGCTTCTTCAACTCATTCGTTGAATAGAACAAGTCGATTCCTCTCTCGACTTAGGAGATTTACTAGTTCAAGGTCATCAAGGCCTTGTCCGGTTTCTTCTCCAAGTTTCTCAATATTCGACAATCATGATGATGCATCAGGATCTGGTTTACCTTGTTGTAACATGCAGAGAAATTCCAGTTATGGCATTGGGGCAAGAGATGAGTTGGATGTGAACTTATTTTCTTCGAGAATTCAAGCAGAGACGGATACTATTGAGACTAGACATATAGATCGACGAAATAGAGTTCGAGAACCAGTTGATCATAATGTTCGCTTTAGTCGAACTTTAAGCGTTGGAAGGCTTCGTGACAGAGTTCTTCGCCGATCAACATTTTCTGACCTTACCTCATTCCCTCTACAACAAGAGAGAGAGCTGAGAGATGATAGTCAGAATACTCGAAGGCAAGCAGTGGAGCGGGATTCAAGAGTTTCACCATTAGATCTTAGTGCTATTAGTTCTTCTACATCTAGTATGTCTAACTCCATATTTAGCAATCAAAACTATGAAGTCGAGACCTCACAATTGCGAGACGGTGGGTATCAGGATCTAATGGAGCATAGATCCAATTTCCTTGAACGAGGAAGAAGAATACGATCACAGGCCCGTTCTCTTCAGAGATTGAGTAGCCGGTTTGAAAATCAGTCCGCACATGGGAGATCATGCATCTTGTCTGGTCAACATAGAAGTGGTCATTGTATGTGCCGATTCAGAAATCGTGACACGAATTCGAATGACGATACTGGTGCTAGAGCTAGCATATCTAGAATTGTTGTACTTGCAGAAGCGTTATTTGAGGTTCTGGATGAAATCCACCAGCAATCTGTGGTTTTATCTTCCCATCCTTCCGCGTCTTCTCTTGGATGCGTTCCTGCACCTATCAACGTCGTGGAGTCTTTGCCTGTCAAGTTTTACGAGAAGTTGCATAAACATCAAGAAGATGCTACACAATGTTATATATGCCTTGTGGAGTACGAGGACGGAGACAGCGTGCGAGTTCTGCCTTGCCATCATGAATTTCATAGAACATGTATAGACAAGTGGTTGAAGGAGATTCACAGGGTATGCCCGCTATGTCGGGGGAACATCTGCGTTTCTGATTCAGAACTATAG | 1512 | 0.4286 | MGSNSSKATSSSTSSSSRNFRKRSRSKALRGFRSYCLGTSSGSRDSDYEDQVCDQNKVDGSDVTYADGNLSDSDEVKSKSLRKVKAGEGDNTCMPNINLDEWSETRIRGTSYGNRTSSVHASSTHSLNRTSRFLSRLRRFTSSRSSRPCPVSSPSFSIFDNHDDASGSGLPCCNMQRNSSYGIGARDELDVNLFSSRIQAETDTIETRHIDRRNRVREPVDHNVRFSRTLSVGRLRDRVLRRSTFSDLTSFPLQQERELRDDSQNTRRQAVERDSRVSPLDLSAISSSTSSMSNSIFSNQNYEVETSQLRDGGYQDLMEHRSNFLERGRRIRSQARSLQRLSSRFENQSAHGRSCILSGQHRSGHCMCRFRNRDTNSNDDTGARASISRIVVLAEALFEVLDEIHQQSVVLSSHPSASSLGCVPAPINVVESLPVKFYEKLHKHQEDATQCYICLVEYEDGDSVRVLPCHHEFHRTCIDKWLKEIHRVCPLCRGNICVSDSEL* | 504 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa4g2531 | 503 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Psa4g2531 | 503 | MobiDBLite | consensus disorder prediction | 256 | 279 | - | - | |
Psa4g2531 | 503 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Psa4g2531 | 503 | ProSiteProfiles | Zinc finger RING-type profile. | 451 | 493 | IPR001841 | - | |
Psa4g2531 | 503 | MobiDBLite | consensus disorder prediction | 256 | 275 | - | - | |
Psa4g2531 | 503 | CDD | RING-H2_PA-TM-RING | 450 | 493 | - | - | |
Psa4g2531 | 503 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 164 | - | - | |
Psa4g2531 | 503 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 164 | 501 | - | - | |
Psa4g2531 | 503 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 164 | - | - | |
Psa4g2531 | 503 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 164 | 501 | - | - | |
Psa4g2531 | 503 | SUPERFAMILY | RING/U-box | 429 | 498 | - | - | |
Psa4g2531 | 503 | SMART | ring_2 | 451 | 492 | IPR001841 | - | |
Psa4g2531 | 503 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 417 | 498 | IPR013083 | - | |
Psa4g2531 | 503 | Pfam | Ring finger domain | 450 | 493 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa4g2531 | Psa-Chr4 | 203600948 | 203604080 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa4g2531 | 140 | 500 | C3H Transcription Factor Family | AT5G45290 | 53.659 | 6.86e-106 | 325 |