Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2489 ATGGCGTCTAAAGGTCAAAGGTCTAAGGTTGATCATGATTATAAAGTTAAACGGCCGAAGGCTCTTGAAGCTCCAAAGGATCCTAGACGACCCAAAACTCATTGGGACCATGTTTTAGAAGAGATGGTGTGGCTATCAAAGGACTTCGAGTCAGAGAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTTTCTTTAAAAGCCAGCAAAGGCATGTTAGATCATGCTACAAGAGGTGAAAAGAAAATGAAGGAAGAAGAGCAGCGGTTAAGAAAAGTTGCAATGAGTATTTCTAAGGATGTTAAGAAATTTTGGACAAAAATAGAAAAGCTGGTTCTTTACAAGCATCAAATGGAACTCGATGAGAAGAAAAAAAAGGCACTTGACAAACAGCTTGAGTTTCTTTTAGGGCAAACTGAGAGATACTCAACTATGTTGGCCGAGAATCTTGTGGATGCTCATACACCAGCAGAGAAAATTTCTGCAGAGCATCACACAGGTATTCAATGCAAAGATATAGATGGAGACATCATCAATGAACCTCAGGAAGCTAATGTTGAGTATCAATCCAACACACCTGATCATGATGAAGAATATGATGTACAATCTGATGATGTATTGGATGATGATGAGCAAACCCTTGAAGAAGATGAGGCTCTTATAACTAAAGAAGAAAGGCAAGAGGAATTGGCAGCTTTGCAGAATGAAATGGATCTTCCAATTGAGGAGTTACTCAAACGTTATGCTGGAGATAAAGGAGAATTGACAAGGCATGAAAGTAGTCCGGATCGTAGTGAAGATGATGAAAAAATAGTTGGAACTGATGGTGCTGATGGTCAGGACGAACCAGTATTGGAAAATGGAGATCGTCTATCTATAAGCAAAATAGGTACAAGCAACTCTGGCATGGTCCCTGGTCTACGTTGTGATGACAATAATGGTGATGCAGCTACACCAACAAATAGTCTATCTCAAAATGAGAATCAGCAATTTGGAAGTCGTAAGGAGGTTACCAGTGAGGCAGCCAATGAAAATGTTCCATTTGATTTTTCTGATGAAGAGGAAGATGGTGACTTTTTGTTTGGCACAGAGGATAAGGATGATGAGACAACCTTATCTGAGGAAGAAAAACTGGACAGAGTTGATGCAATTGATCCAAAAGACGAGATTGCATTACTACAAAAAGAGAGTAACATGTCGGTTGAGGAACTACTTGCAAGGTATAAAAAGGACCTGAGTGATGATGGGGATCAGGAAGTTGAGTCTGATTATGATTCTGCTTCCTCAAAAGACCATCAGAGTTCACCAGTCCATGTTGATGATGATGCTGAGCAGAAAATTCCTGCTGTTGATGTGGGTGAAGATATGAAGTCTGGCAAGCAACTGGCTGTCGTACAGACCCAGGCAGAAGAACAGGGGGAAGGACCCTGTGAAAATTCAGAGGAAAGAGAAAGTGAGGATATAATTGCTGATGCAGCTGCTGCTGCAAGATCAGCACAACCAACTGGAAACACCTTCTCCACAACTAAAGTGCGTACAAAATCCCCCTTTCTACTCAAGTACACTCTTCGTGAATATCAACATATTGGATTGGATTGGCTCGTAACAATGTATGAAAAAAAGCTGAATGGAATTCTGGCAGATGAAATGGGGCTTGGAAAAACCATAATGACTATAGCTTTGCTTGCACATCTTGCCTGTGAAAAGGGGATTTGGGGTCCACATCTAATTGTAGTGCCAACTAGTGTGATGCTTAACTGGGAGACTGAATTTCTGAAATGGTGTCCCGCGTTTAAAATTTTGACCTATTTTGGAAGCGCAAAGGAGCGAAAACATAAAAGACAAGGATGGTTAAAACCAAACTCATTTCACGTATGCATAACAACATATAGATTAGTTATTCAGGATTCCAAAGTTTTTAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCTCACCTCATTAAAAACTGGAAATCACAAAGGTGGCAGACACTGTTGAATTTCAATTCAAAACGACGAATTCTGTTGACTGGTACACCGCTACAGAATGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTGATGCCCCATGTTTTCCAGTCACACCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGGATGGTAGAGGGAGAGGAAAAAGTTAATAAGGAGGTTGTTGATCGCCTGCATAACGTCCTTCGTCCATTCTTACTCCGTCGATTAAAGAGAGATGTAGAAAAGCAACTTCCCATGAAAATTGAGCATGTCATATACTGTAGGCTGTCAAAGAGGCAGAGGAATTTGTATGAGGATTTTATTGCTAGCTCAGAGACTCAAGCTACTCTTGCAAATGCCAATTTTTTTGGGATGATCAGTATTATCATGCAACTTCGGAAGGTTTGTAATCATCCTGACCTATTTGAGGGTCGTCCAATCGTCAGTTCTTTTGATATGTGTGGGATTGATATTCAGTTAAGTTCTTCTATTTGCTCCATGCTTTTGCCTAGCTCCTTTTCAACAGTTGACTTAGAAGGTTTGGGTCTTTTATTTACTCATCTTGACTATAACATGACTTCTTGGGAGAGTGATGAAGTGCAATCTATTGAGACCCCTGCAACTTCTATTATGGAACGCACTGATATGGCTGATCTAGAAGTAATTAAGCCTGGACTGAAGTGTCAGAAAAAGCAGCAAGGAACAAGTATTTTCGAAGAGATCCGAAAAGCAATTTGGGAAGAGAGAATATCACAGGCAAAGGAACGTGCAGCAGCTATTGCATGGTGGAACTCCTTGAGGTGTAAAAAACGACCCATCTACTCAACCACTCTAAGGGACCTTGTTACCATAAGGCATCCTGTATATGATATTTATCAAAAGAAGGCAAACCCTGTTTCATACTTGTTCCCATCAAAACTGGCTGACATTGTTCTCTCCCCTGTTGAACGATTTCAAAGGACGATTGATGTGGTTGAAAGTTTCATGTTTGCCATTCCTGCCGCCCGAGCTTCCCCTCCTGTTTGCTGGTGCAGTAAAAGGGATACAACTGTCTTTCTGAACCCATCTTACAAGCAGCGATGCTCTGATATTCTATCACCACTATTGTCACCAATCAGGCCCGCAATTGTTCGTCGTCAAGTATATTTCCCAGATAGGCGACTTATACAATTCGACTGTGGAAAATTACAGGAGCTAGCAATTTTGCTGAGGAGATTAAAATCAGAAGGTCACCGAGCTCTGATATTCACTCAGATGACTAAGATGCTTGACATATTAGAAGCGTTCATTAATTTGTATGGTTATACTTATATGCGCTTAGATGGATCAACGCAGCCAGAGGAGAGGCAGACCTTAATGCAGCGTTTTAACACAAACCCCAAATTTTTTCTTTTCATCCTGTCAACTCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACAGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAGGCTCAAGATCGATGCCACAGAATTGGTCAGACACGTGAAGTGCATATATATCGATTGATTAGTGAAAGCACCATTGAGGAGAATATTTTGAAGAAAGCAAAGCAAAAGCGCGCACTTGATGATTTAGTTATACAAAGTGGGGGTTATAATACTGAGTTCTTCAAAAAGCTTGATCCGATGGAACTATTTTCAGGTCATAGAACACTTTCAATTAAAGACACGCCGAAGGAGAAAAACCAGAACAGGGGAGAAGTTTCTGTTACTAATGCAGATGTGGAAGCTGCATTAAAACATGTCGAAGATGAGGCAGATTATATGGCACTGAAGAAAGTTGAACTGGAAGAAGCCGTGGATAATCAGGAATTTACAGAAGAAGCCAGTGGGAGACTTGAAGAGGATGAATATGCAAATGAGGATGATGAGCCTCAAGAATTAGGCGAATCTGTTTCCAATTTGAATAAAGAGGATGCATTAATGTTAAATGGAGGTGATCCTAAGGAAGATAAACCGCCCTCTGTTGTTGCCAAAGAAGATGATGTTGACATGCTGGCAGATGTGAACCAGATGGCAGAAGCTGCAGCTGCAGCTGGGCAGGCGTTATCAGCATTTGAGAGTGAGCTACGCCCTATTGACCGATATGCCATTCGTTTTCTAGAGCTGTGGGATCCAATTATAGATAAAGCAGCCTTGGAATCTGAAGTCAGGATTGAGGATACTGAATGGGAATTGGATCGCATTGAAAGGTATAAGGAGGAGATGGAAGCCGAAATTGACGAAGATGAGGAGCCTCTTGTATATGAAAGCTGGGATGCAGATTTTGCAACAACGGCTTATCGGCAGCAAGTAGAGGCCTTGGCTCAACATCAATTAATGGAAGAACTTGAATATGAAGCTAAACTGAAAGAGGAAGCTGAAGAAGAGAAAAACAGGACTCAAACACCAAATGATTCGAAGCTCAAGCCTAAAAAGAAACCCAAGAAAGCAAAGTTCAAATCTCTGAAGAAAGGATCTTTAACCTCTAGCTTAAGAACTGTGAAAGATGAGCGACGAGCAGTGCCAATGGCCATAGATGATGATGCTGCCACTAGTCTTGATTTTGTGTCTCCAAGTTCAAGTAGACATAAAAAACGCAAGAAGTCTAAATTAACAACTGATGGTGAAGAAGAAAAGAGATTTAAGAAGTCCAAAAAGTACAAGAGGGATCCTCTTGACATTTATGATTCAGATTTGGAATCCATATCAATAGATATGCAGGATGAACATGCAGAATCAGATACATGTAAAAGTCTGGTTGTGTTGGAACAGAAAACAGTTGGCAGGAGTAAGATGGGAGGAAAAATATCCATCACTCCAATGCCTGTGAAACGGGTCTTCATGATAAAATCCGAAAAATTGAAGAAGGGAAATATTTGGTACAGAGATTGTATTCCTTCAGCTGATTTTTGGCTGCCTCAGGAGGATGCAATATTATGTGCAGTTGTTCATGAATATGGTCCTAACTGGAGCTTTGTTAGTGAAATGCTTTATGGCATGACTGCTGGTGGGGCATATAGGGGGAGATATCGTCATCCTGTCCATTGCTGTGAGAGGTTCAGAGAATTGTTCCAAAAATATGTCTTGTTCTCCTTGGACAATGCAAATCATGAGAAAATGAACAACACCTGCTCTGGAAAGGCTCTTAAAGTAACAGAGGATAACATTCAAATATTGTTAGATGTTGCTTCTGAACAGGCAAATAGAGAGTTATTACTGCAGAAGCACTTTTTTGCATTGCTTTCTTCTGCCAGGAAGGTGGCGTCACATGTTGACCGCAGACAAAATCCTCATGCCACTAGCAATGGTCTCTATTTTGACCAGGCTTTCTTCACTTCAATTGGCCAGCATTCACAATACCCCCTGAACAAACCCTCCGAAAGGACGGCGTTTGCTAATTCGGCCCAGAGCAAGAAGTTACTGGAAGCTGCACTGGAAGACATGAGTAGGCCAGCAAATGACAAAACATTCCTATCTAACCAGGGTGGAGGCATGCCGGTGAGTGCAGAACAGGTGGATATTACTCTGGAGTTCCCGAAAGAGGAAAGTGATTCCTTATCCTCATTTCCATCTGTTATAAAATTATCAATAAAAGGGGATGAAGCACTGCCATCTTTAAATAAGCACACAAGAGATGATCATCTCAAAAGTTGTTTTTCTGCTGCTGAGAATCGTTTCAGGGAGGTATCAAGAGCTTGTGAAGAAGACCGATCTGGATGGGCTTCATCCACATTCCCAACAAATGATGCGAAGTCTCGACCTGGATCCAGGATACAGTCTTCTGGAAAGCAAAGGTCTTCCATCTCCGATCTTACTAAGCCGTCTAGGGGAAAGACAAAAAGAGCTTCAGTGGATTCTAGTGAAATGCATCGCTGTCAAGCTGAACCATTATTCCCGCCAATGCCGCTGCTTCCTGAACTGGCATTGGATCTCCCTTCATCTTCTATGAATGAGTTTGGGTTTACTACGGATAGAAATCTCCCTTTTGATTTGAATGAAGAAAGTTCATTGGAAAGGGAAAGTTTTGGAGTCATCCCACATGATTATATAGCTGAGTTAATCTCGGGCCTTGATGATTGTACAACATTCCCTGAATATACTGATGTTAGATAA 6147 0.4113 MASKGQRSKVDHDYKVKRPKALEAPKDPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVSLKASKGMLDHATRGEKKMKEEEQRLRKVAMSISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDAHTPAEKISAEHHTGIQCKDIDGDIINEPQEANVEYQSNTPDHDEEYDVQSDDVLDDDEQTLEEDEALITKEERQEELAALQNEMDLPIEELLKRYAGDKGELTRHESSPDRSEDDEKIVGTDGADGQDEPVLENGDRLSISKIGTSNSGMVPGLRCDDNNGDAATPTNSLSQNENQQFGSRKEVTSEAANENVPFDFSDEEEDGDFLFGTEDKDDETTLSEEEKLDRVDAIDPKDEIALLQKESNMSVEELLARYKKDLSDDGDQEVESDYDSASSKDHQSSPVHVDDDAEQKIPAVDVGEDMKSGKQLAVVQTQAEEQGEGPCENSEERESEDIIADAAAAARSAQPTGNTFSTTKVRTKSPFLLKYTLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKHKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKIEHVIYCRLSKRQRNLYEDFIASSETQATLANANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMCGIDIQLSSSICSMLLPSSFSTVDLEGLGLLFTHLDYNMTSWESDEVQSIETPATSIMERTDMADLEVIKPGLKCQKKQQGTSIFEEIRKAIWEERISQAKERAAAIAWWNSLRCKKRPIYSTTLRDLVTIRHPVYDIYQKKANPVSYLFPSKLADIVLSPVERFQRTIDVVESFMFAIPAARASPPVCWCSKRDTTVFLNPSYKQRCSDILSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRRLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKFFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAKQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTLSIKDTPKEKNQNRGEVSVTNADVEAALKHVEDEADYMALKKVELEEAVDNQEFTEEASGRLEEDEYANEDDEPQELGESVSNLNKEDALMLNGGDPKEDKPPSVVAKEDDVDMLADVNQMAEAAAAAGQALSAFESELRPIDRYAIRFLELWDPIIDKAALESEVRIEDTEWELDRIERYKEEMEAEIDEDEEPLVYESWDADFATTAYRQQVEALAQHQLMEELEYEAKLKEEAEEEKNRTQTPNDSKLKPKKKPKKAKFKSLKKGSLTSSLRTVKDERRAVPMAIDDDAATSLDFVSPSSSRHKKRKKSKLTTDGEEEKRFKKSKKYKRDPLDIYDSDLESISIDMQDEHAESDTCKSLVVLEQKTVGRSKMGGKISITPMPVKRVFMIKSEKLKKGNIWYRDCIPSADFWLPQEDAILCAVVHEYGPNWSFVSEMLYGMTAGGAYRGRYRHPVHCCERFRELFQKYVLFSLDNANHEKMNNTCSGKALKVTEDNIQILLDVASEQANRELLLQKHFFALLSSARKVASHVDRRQNPHATSNGLYFDQAFFTSIGQHSQYPLNKPSERTAFANSAQSKKLLEAALEDMSRPANDKTFLSNQGGGMPVSAEQVDITLEFPKEESDSLSSFPSVIKLSIKGDEALPSLNKHTRDDHLKSCFSAAENRFREVSRACEEDRSGWASSTFPTNDAKSRPGSRIQSSGKQRSSISDLTKPSRGKTKRASVDSSEMHRCQAEPLFPPMPLLPELALDLPSSSMNEFGFTTDRNLPFDLNEESSLERESFGVIPHDYIAELISGLDDCTTFPEYTDVR* 2049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2489 2048 MobiDBLite consensus disorder prediction 422 443 - -
Psa4g2489 2048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 506 744 IPR027417 -
Psa4g2489 2048 MobiDBLite consensus disorder prediction 247 385 - -
Psa4g2489 2048 PANTHER HELICASE SRCAP-RELATED 3 1830 - -
Psa4g2489 2048 SMART helicmild6 1093 1176 IPR001650 -
Psa4g2489 2048 MobiDBLite consensus disorder prediction 313 339 - -
Psa4g2489 2048 MobiDBLite consensus disorder prediction 1284 1315 - -
Psa4g2489 2048 Coils Coil 1454 1478 - -
Psa4g2489 2048 Gene3D - 1037 1282 IPR027417 -
Psa4g2489 2048 MobiDBLite consensus disorder prediction 1 33 - -
Psa4g2489 2048 Pfam SNF2-related domain 539 811 IPR000330 GO:0005524|GO:0140658
Psa4g2489 2048 SMART ultradead3 518 711 IPR014001 -
Psa4g2489 2048 MobiDBLite consensus disorder prediction 346 371 - -
Psa4g2489 2048 Gene3D - 1646 1706 - -
Psa4g2489 2048 MobiDBLite consensus disorder prediction 1298 1312 - -
Psa4g2489 2048 Coils Coil 1403 1423 - -
Psa4g2489 2048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 746 1238 IPR027417 -
Psa4g2489 2048 MobiDBLite consensus disorder prediction 1952 1966 - -
Psa4g2489 2048 MobiDBLite consensus disorder prediction 1915 1968 - -
Psa4g2489 2048 PANTHER HELICASE SRCAP 3 1830 - -
Psa4g2489 2048 MobiDBLite consensus disorder prediction 1469 1502 - -
Psa4g2489 2048 Pfam Helicase conserved C-terminal domain 1068 1176 IPR001650 -
Psa4g2489 2048 SMART bromneu2 23 94 IPR014012 -
Psa4g2489 2048 MobiDBLite consensus disorder prediction 1918 1951 - -
Psa4g2489 2048 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Psa4g2489 2048 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 534 699 IPR014001 -
Psa4g2489 2048 ProSiteProfiles Myb-like domain profile. 1649 1702 IPR001005 -
Psa4g2489 2048 MobiDBLite consensus disorder prediction 1548 1562 - -
Psa4g2489 2048 MobiDBLite consensus disorder prediction 1469 1486 - -
Psa4g2489 2048 Gene3D - 768 846 - -
Psa4g2489 2048 MobiDBLite consensus disorder prediction 409 443 - -
Psa4g2489 2048 CDD DEXQc_SRCAP 522 744 - -
Psa4g2489 2048 Gene3D - 491 767 IPR038718 -
Psa4g2489 2048 Coils Coil 206 235 - -
Psa4g2489 2048 MobiDBLite consensus disorder prediction 247 275 - -
Psa4g2489 2048 MobiDBLite consensus disorder prediction 1534 1562 - -
Psa4g2489 2048 CDD SF2_C_SNF 1052 1187 - -
Psa4g2489 2048 SUPERFAMILY Homeodomain-like 1647 1704 IPR009057 -
Psa4g2489 2048 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1067 1217 IPR001650 -
Psa4g2489 2048 Pfam HSA domain 28 94 IPR014012 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2489 Psa-Chr4 200590382 200608264 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2489 542 814 RAD5 or RAD16-like Gene Family AT5G43530 30.124 2.16e-28 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa4g2489 SNF2_N 2.5e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2489 - - aprc:113871102 3155.16