Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2484 ATGCACAGTGGTAGCTCGGTTGCGAGGGTTCTACCACCGTTACCTAAACCAAACACCTTCCCATTCCCAAATGGATCTAGGCTCAGGGTTCCATGGTCACAACAAGAACATGATTTATTTGTGATGGGGCTTACTGAATATGGAAAAGGGAAATGGAGCAAAATAGCAAAGCACTATGTATGCAACAAGACACCACAACAAGTTCAATGTTATGCTCGTAACTTTTTCAAATATCTACCAGCTTCATATGTGGATCGTTTTAAGAGAAAGAAACTATCTTCAAATACCAACAACTTTGTTTCTAGAAAAAACAAAGAAACTCTCGATCTTTTTCCTATGAAAGATTATAGAGAAGAACCTAGTACTTTCATGAATGTGCCTAGGGTTTCTGCTAGTAATGGAGAAGTTGATTTGGAACTTCGCTTAAGTTTATATAAGTGA 441 0.3787 MHSGSSVARVLPPLPKPNTFPFPNGSRLRVPWSQQEHDLFVMGLTEYGKGKWSKIAKHYVCNKTPQQVQCYARNFFKYLPASYVDRFKRKKLSSNTNNFVSRKNKETLDLFPMKDYREEPSTFMNVPRVSASNGEVDLELRLSLYK* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2484 146 ProSiteProfiles SANT domain profile. 27 80 IPR017884 -
Psa4g2484 146 Gene3D - 30 80 - -
Psa4g2484 146 PANTHER MYB-LIKE DNA-BINDING DOMAIN PROTEIN 5 105 - -
Psa4g2484 146 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 5 105 - -
Psa4g2484 146 SUPERFAMILY Homeodomain-like 24 77 IPR009057 -
Psa4g2484 146 SMART sant 28 78 IPR001005 -
Psa4g2484 146 ProSiteProfiles Myb-like domain profile. 24 76 IPR001005 -
Psa4g2484 146 Pfam Myb-like DNA-binding domain 29 74 IPR001005 -
Psa4g2484 146 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 29 76 IPR006447 GO:0003677
Psa4g2484 146 CDD SANT 31 76 IPR001005 -
Psa4g2484 146 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 80 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2484 Psa-Chr4 200312905 200314570 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa4g2484 Myb_DNA-binding 5.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2484 - - mtr:MTR_8g072990 156.762