Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2467 ATGACTCGCTCACTTAGAACATTACAATCCATTTCCTCCGCCGCACCTCCGCCGGACTCCACCGCCTCATTAGAATCCGACTTCGTTGTCATCCTCGCCGCCCTCCTCTGCGCTCTCATATCCGTCGTCGGCCTCACCGCCATCGCCCGATGCGCTTGGCTCCGCCGCGGCCCTGCCGCCGGAGCCTCCCCGGCCACAGCCGTCGCTAACAAAGGTCTCAAAAAGAAAGTTCTCAATTCACTTCCGAAATTCACCTACCTCGACGACACTCCCGGAAAATGGATAGTCTCGTCGGAGTGCGCCATTTGTCTCTCGGAGTTCACCGCCGGCGAAGAGGTTAAAGTACTTCCCCAGTGCGGTCACGGCTTCCACGTGGCATGTGTAGACACGTGGCTTGGCTCTCACTCTTCGTGTCCTTCTTGCCGAGCTCCTTTCGCCGTCGCTAGGTGTCAGAAATGCGGCCTATACCAACCAAATCCCGCCGGAGAAGTCCCCGGAGAAACAGAGCCGAAGTCCATCGGCGGCGGCGAGAATGCAGAAGTTGTTGTTAATGTTAACTGTATTAGCGACGGTGTAGATAGACATAGCCACAGTGGTTATAATGGCTTCTTGCCTTAA 618 0.5615 MTRSLRTLQSISSAAPPPDSTASLESDFVVILAALLCALISVVGLTAIARCAWLRRGPAAGASPATAVANKGLKKKVLNSLPKFTYLDDTPGKWIVSSECAICLSEFTAGEEVKVLPQCGHGFHVACVDTWLGSHSSCPSCRAPFAVARCQKCGLYQPNPAGEVPGETEPKSIGGGENAEVVVNVNCISDGVDRHSHSGYNGFLP* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2467 205 SUPERFAMILY RING/U-box 79 147 - -
Psa4g2467 205 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 188 - -
Psa4g2467 205 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 188 - -
Psa4g2467 205 Pfam Ring finger domain 99 142 IPR001841 -
Psa4g2467 205 CDD RING-H2_PA-TM-RING 99 142 - -
Psa4g2467 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 147 IPR013083 -
Psa4g2467 205 SMART ring_2 100 141 IPR001841 -
Psa4g2467 205 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2467 Psa-Chr4 197327683 197329020 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2467 1 153 C3H Transcription Factor Family AT1G20823 59.036 9.80e-59 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2467 - - cam:101497131 327.405