Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2460 ATGTCGTGTTCTTCTTCATCTGGGTCGGAAGATGATGATGAGGGCTTCGATTCCTACCGGAAAGGAGGTTACCATGCTGTCAGGGTCGGCGATCAGTTCGCCGGTGGTCGGTATGTGGCTCAGAGGAAATTGGGTTGGGGTCAGTTTTCAACCGTTTGGCTTGCTTATGATACTACAACCTCTGCATATGTTGCTCTCAAGATTCAAAAAAGTGCGGCGCAGTTTGTTCAAGCTGCTCTTCACGAGATAAGCGTTCTTTCATCCATTGCTGACGGTGCTCCGTCCAATTCAAAATTTGTTGTTCAATTGATTGACCAGTTTAAGCACACGGGCCCAAACGGCCAGCACCAGTGCATGGTGCTTGAGTTTCTCGGAGACAGCTTGCTTCGTCTAGTCAAGTACAACCGTTACAAAGGTCTTCCGTTGAATAAAGTTAGGGAGATTTGTCAATGCATTTTAATTGGTTTGGATTACTTGCATAGAGAACATGGTATTATCCATACAGACCTAAAACTGGAAAATGTTCTTCTTGTTTCTACCATTGATCCTGCCAAGGACCCTGTTAGATCAGGAGTCTCGCCGATTTTAGAGAGGCCAGAGGGAAACGTAAACGGCGCTGTTACTAGTCTTATTGAGAAAAAGTTGAAAAGGAGAGCGAGGAGGGCAGTCGCTAAAATATCTGGACAAAGAGCTTCGATGGGAGGAATGGGGGAATCACCGAAATCTGAGAGAAGAAATATTCATGGGATTGATGTTAGATGCAAAGTGGTAGATTTTGGAAATGCTTGCTGGGCTGATAACCCTTTTGCGGAAGAAATTCAGACAAGACAGTATAGAGCTCCCGAAGTTATACTGCAAGCTGGTTATTCGTTATCCGTCGACATGTGGTCTTTTGCTTGTATTGCTTTTGAACTCGCCACTGGTGATATGTTGTTTACTCCCAAAGTCGGGCAAGGTTTTAGCGAGGATGAGGATCACCTTGCTCTGATGATGGAACTCCTTGGAAAGATGCCTCGAAAGATTGCTACTACAGGAGCGAAATCTAAGGATTTCTTCGACAGACACGGTGATCTGAAAAGGATTCGAAGGCTAAAGTTTTGGCCACTAAACAAACTATTGATCGAAAGATACATGTTTTCAGAGAGCGACGCTCTTGAATTTTCGGAGTTTCTTGTACCTCTTCTTGATTTTGCGCCCGAGAAGCGACCAACTGCGCAGCAGTGCCTACAACACGCGTGGCTCGCAGGAAATGACTCAGTTCCTAGTGAAATGACAAATGAAACTAGTGTTGAAAACGTGGATGCTGGAATAAGCAACCTTAAAATCAGGGTGGGGAAGTGA 1341 0.4497 MSCSSSSGSEDDDEGFDSYRKGGYHAVRVGDQFAGGRYVAQRKLGWGQFSTVWLAYDTTTSAYVALKIQKSAAQFVQAALHEISVLSSIADGAPSNSKFVVQLIDQFKHTGPNGQHQCMVLEFLGDSLLRLVKYNRYKGLPLNKVREICQCILIGLDYLHREHGIIHTDLKLENVLLVSTIDPAKDPVRSGVSPILERPEGNVNGAVTSLIEKKLKRRARRAVAKISGQRASMGGMGESPKSERRNIHGIDVRCKVVDFGNACWADNPFAEEIQTRQYRAPEVILQAGYSLSVDMWSFACIAFELATGDMLFTPKVGQGFSEDEDHLALMMELLGKMPRKIATTGAKSKDFFDRHGDLKRIRRLKFWPLNKLLIERYMFSESDALEFSEFLVPLLDFAPEKRPTAQQCLQHAWLAGNDSVPSEMTNETSVENVDAGISNLKIRVGK* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2460 446 SUPERFAMILY Protein kinase-like (PK-like) 32 424 IPR011009 -
Psa4g2460 446 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Psa4g2460 446 CDD STKc_SRPK 27 414 - -
Psa4g2460 446 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 5 446 - -
Psa4g2460 446 Pfam Protein kinase domain 253 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g2460 446 Pfam Protein kinase domain 38 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g2460 446 ProSiteProfiles Protein kinase domain profile. 38 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g2460 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Psa4g2460 446 Gene3D Transferase(Phosphotransferase) domain 1 92 414 - -
Psa4g2460 446 SMART serkin_6 38 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g2460 446 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 5 446 - -
Psa4g2460 446 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2460 Psa-Chr4 196499068 196502979 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2460 4 432 EF-hand Containing Proteins AT5G22840 49.480 3.96e-166 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Psa4g2460 Pkinase 1.2e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2460 K08832 - gmx:100811724 752.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2460 4 196499068 196502979 Psa4g2460 4 196499068 196502979 ECH
Psa2g3363 2 378473035 378476786 Psa4g2460 4 196499068 196502979 PCT