Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2454 ATGATGGCAGATAAAACCTTGGTACGAAGACTGTCAGCCTGCGAAACTATGGGCTCTGTTACTACAATTTGTAGTGATAAGACAGGAATATTAACTGTTGTTGAGGCATATGTTGGGAGGAACAATCTAAATCCACCAAATGACTCTTCAAAGTTTCATCCAGAAGCATTATCCCTGATAAATGAAAGCATTGCACAGAATTCCACTGGAAATGTTTTTGTGTCTAAGGATGGTGGAGCGGTAGAGGTTTCAGGATCACCAACAGAGAAGGCGATTCTTTCATGGGCAGTCAAGTTGGGTATGGGTTTTGATCTTATCAGATCTAGTTCGACAGTTCTTCACGTCTTTCCATTCAATTCCGAGAAAAAACGAGAACAAAAGGCCTTTTTCAAGAAGGCTATTGATGACATGGCTGCTCGCAACTTGCGTTGCGTTGCCATTGCATACAGGTCATATGAATTAGACCAAATTCCATCTAATGAGGAGGATTTAAACCAATGGTCCTTACCAAAAGACGAGCTTGTTTTGCTTGCTATTGTTGGAATCGAGGATCCTTGTCGCCCTAGTGTCAAAGATGTTGTGAGAATATGTACTGAAGTTGGTGTTAAGGTATGTGTGGTTACCGGAGACAACCTTCAAACCGCAAAGGCAATAGCTCTGGAGTGTGGGATACTAGCTTCAAATGAAGATGCTGTTGAGCCAAATATAATTGAAGGAAAGGTATTTAGGGAGCTATCAGAACAAGAAAGAAAACACATTTGTGGAATGACTGGAGATGGTGTCAACGATGCTCCAGCTTTGAAGAAGGCCGATATTGGAATCGATGTTGCCGATGCTACAGATGCCGCAAGAGGTGCTTCTGATATTGTCCTCACAGAACCTGGATTGAGTGTTATCATCAGTGCAGTCTTAACTAGTAGGGCTATTTTCCAAAGGATGAAAAACTACACGATCTATGCAGTATCTATCACTATCCGTATAGTGTTTGGCTTCATGTTCATTGCACTGATATGGAAATTTGACTTCTCACCTTTCATGGTCTTGATTATTGCCATTCTTAATGATGGAACAATCATGACAATTTCAAGAGATAAGGTGGTTCCATCTCTCTTACCCGATAGCTGGAAATTGAATGAAATATTTGCTACTAGGATTGTTCTTGGAGGTTATTTAGCTCTGATGACCGTAATATTCTTCTGGGCAATTAAAGGAAATAAATTCTTCCCTGACAAATTTGGAGTTAGGCACCTGAATTATGATGAAATGATCTCTGCTTTGTATCTTCAAGTCAGTATAGTTAGCCAGGCTTTGATATTTGTGACCCGTTCTCGTGGTTGGTCGTTTCTTGAATGCCCTGGAGCCCTATTAGTCATTGCTTTCCTCATTGCTCAACTGATTGCTACATTAATAGCGGTATATTCCAACTGGGGATTTGCAAAGGTACAAGGAATTGGTTGGGGTTGGGCAGAAGTAATCTGGCTCTACAGTATTGTCTTCTATATTCCACTCAACGTGATGAAATTTGCCATCCGCTACATATTGAGTGGAAAGGCTTGGAACAATCTCCTGGACAACAAGACTGCCTTCACCACCGAGAAAGACTACGGAAAAGAGGAGACGGAAGCTCAATGGGAACACGCTCAGAGGACTCTACATGGACTTCAACCACCAGAGAGTTCTGGTATTTTCAACGAGAAGAGCAGTTACAGGGAACTCTCTGAGATTGTCGAGCAGGCCAAGAGAAGAGCTGAAGTTGCAAGGCCTCGCGAGCTGCACACACTGAAAGGGCATTTTGAGTCTGTGGTGAAGCTAAAAGAGCAGACGGTTGCGCAAATCCGAGTAATGCTGGCATTTGTTGGCGAGTCTCGAGCACTACAAGGCTACTCATCATCCTTGAAGGTTGCACAAAAGCTTGCCTTCAAAGATCAAGTCAATTCAGCATTAGAACCCTTGTGGCATGAACTTAAGCTGTTGCATAAGCAAGCAGAAAATATCCGGACTTGGAATGCCGAACGAATCTCAGATTACACTTTCAATGGGAACGACACTGGAAGCCAAACAAAATACACTGTGGTAAATAAGCTCATTTACCAACGCGAACGAGAAGCGTTTACCTACGTTCATCGGTCGAGCTCGTCGCAACCGGTTAGCTTCCTTTTGGAGCTGTATTTCTATGTTTCGATTCTGCTTTGCATCCTTCCGAGGGAACCATGGTTGTTGTTCCGATTTGATTTCATTTAG 2241 0.4261 MMADKTLVRRLSACETMGSVTTICSDKTGILTVVEAYVGRNNLNPPNDSSKFHPEALSLINESIAQNSTGNVFVSKDGGAVEVSGSPTEKAILSWAVKLGMGFDLIRSSSTVLHVFPFNSEKKREQKAFFKKAIDDMAARNLRCVAIAYRSYELDQIPSNEEDLNQWSLPKDELVLLAIVGIEDPCRPSVKDVVRICTEVGVKVCVVTGDNLQTAKAIALECGILASNEDAVEPNIIEGKVFRELSEQERKHICGMTGDGVNDAPALKKADIGIDVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFSPFMVLIIAILNDGTIMTISRDKVVPSLLPDSWKLNEIFATRIVLGGYLALMTVIFFWAIKGNKFFPDKFGVRHLNYDEMISALYLQVSIVSQALIFVTRSRGWSFLECPGALLVIAFLIAQLIATLIAVYSNWGFAKVQGIGWGWAEVIWLYSIVFYIPLNVMKFAIRYILSGKAWNNLLDNKTAFTTEKDYGKEETEAQWEHAQRTLHGLQPPESSGIFNEKSSYRELSEIVEQAKRRAEVARPRELHTLKGHFESVVKLKEQTVAQIRVMLAFVGESRALQGYSSSLKVAQKLAFKDQVNSALEPLWHELKLLHKQAENIRTWNAERISDYTFNGNDTGSQTKYTVVNKLIYQREREAFTYVHRSSSSQPVSFLLELYFYVSILLCILPREPWLLFRFDFI* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2454 746 Gene3D - 34 125 IPR023299 GO:0000166
Psa4g2454 746 Pfam haloacid dehalogenase-like hydrolase 21 271 - -
Psa4g2454 746 Gene3D - 186 233 IPR023214 -
Psa4g2454 746 PRINTS H+-transporting ATPase (proton pump) signature 130 148 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa4g2454 746 PRINTS H+-transporting ATPase (proton pump) signature 257 273 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa4g2454 746 PRINTS H+-transporting ATPase (proton pump) signature 288 313 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa4g2454 746 PRINTS H+-transporting ATPase (proton pump) signature 427 448 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa4g2454 746 Gene3D - 567 613 - -
Psa4g2454 746 PANTHER PLASMA MEMBRANE ATPASE 248 599 - -
Psa4g2454 746 PRINTS P-type cation-transporting ATPase superfamily signature 24 38 - -
Psa4g2454 746 PRINTS P-type cation-transporting ATPase superfamily signature 178 189 - -
Psa4g2454 746 PRINTS P-type cation-transporting ATPase superfamily signature 200 210 - -
Psa4g2454 746 PRINTS P-type cation-transporting ATPase superfamily signature 257 276 - -
Psa4g2454 746 PRINTS P-type cation-transporting ATPase superfamily signature 280 292 - -
Psa4g2454 746 SUPERFAMILY Calcium ATPase, transmembrane domain M 1 514 IPR023298 -
Psa4g2454 746 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 105 346 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa4g2454 746 Gene3D - 126 185 IPR023299 GO:0000166
Psa4g2454 746 Gene3D - 275 513 - -
Psa4g2454 746 PANTHER CALCIUM-TRANSPORTING ATPASE 248 599 - -
Psa4g2454 746 Gene3D - 1 33 - -
Psa4g2454 746 SUPERFAMILY HAD-like 22 349 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2454 Psa-Chr4 196200023 196202821 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2454 7 605 Primary Pumps ATPases AT5G57350 52.496 0.0 616
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2454 K01535 - gmx:100816905 657.521