Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2444 ATGATTAGAGTTTGGCTTGTGCTGTTGATGGCTCTCTCCAATTTGTTGTTCTCTTCTGCTGCGGTTGGCTTGGAGAATTCGACAGTACCGGAGTTTATAAATATTGGGGTTCTCTACTCTTTCAATACTAGTGTTGGTAGAATAGTGAAAATTGCGGTGGAAACTGCGGTTGACGATATAAATTCTGATTCTACTATTCTTGGTAAAACTAAGTTGACGCTCTCATTTCAAGAAGATTCAAAATACAGAGGCTTTTTGAGCATTGCTGAAGCGTTGCAGCTCATGGCGACACACACTGTGGCCATTATCGGTCCGCAGACATCTACGACCGCTCATGTCATATCTCATATAGCAAATGAGCTTCATGTTCCTCTGTTATCGTTTTCAGCCACAGATCCTACTCTTTCCTCGCTTCAATTCCCGTTCTTCATTAGAACTGCTTTCAATGACATTTTTCAAATGACTGCAATAGCAGACATGGTTAGCCACTACGGTTGGAGAGAGGTTATCGTGGTCTACGGGGATGACGACCATGGGAGGAACGGAATTGGTGCGCTAGCGGATAAGCTTGCTGAGAGACGTTGCAAGATATCGTTTAAAGCACCGATGACTCCTGATGCAAAGAGGGAGGAGATTACTGACATTCTTGTTCAGGTGGCTTTGGCAGAATCTCGGGTTATAAGTTCTCACACAAGTACGTTCTTGGGTCCAAAAGTCTTGAGTGTTGCAAAGTCTCTTGGAATGATGCAAAACGGTTATGTTTGGATTGCTACTACTTTTCTCACATCTTATATCGACATAGATAGTCCACTCTCTTCCGATGAAATGGATAACATTCAAGGAGTTATTACACTAAGAATGTACATACCAGATTCGAAACTCAAAAGATCCTTTGTTTCTAGGTGGACGAATTTGACTAGAGGAAAGGAGGGAAACGGTTCTCTTGGTTTGAGTACGTACGGTATCTTTGCGTATGATACTGTTTACGTGCTTGCTCGCGCCCTTGATACATTTTTGAAACAAGGGAACCAAATTACATTTTCGCATGATCCAAAGATATCTGAACTACGTGGAGACAGCTTGCATCTAGATGCTGTGAAAATCTTCAATGAAGGAAACCTGTTGTGTAAAAGTATTTATGCGGTTAACATGACTGGTGTAACGGGTCCATTCAGGTATACTCCTGATGGAAACCTTGCTAATCCAGCATATGAGATCATCAATGTGATCGGATCAGGTACTCGCAGAATCGGTTATTGGTCTAATTACTCCGGATTATCAGTTGTTCCTCCAGAAACACTTTATTCAAAACCACCTAACCGTTCCTATGAAAACCAAAAGCTACTCACTGTGTTTTGGCCGGGAGAAACAACCCAAACACCTCGCGGTTGGGTTTTTCCAAGCAATGGAAAGCTGTTAAGAATCGGAGTACCAAAAAGGGTTAGTTACCGCGAATTTGTTTCTCAGGTACAATCCACTGACATGTTCAAGGGATTCTGCATTGATGTGTTTCTTTCTGCAGTAAACTTGTTACCCTATGCTGTCCCCTATAAGTTTGTTCCATACGGTGACGGTCAAAGCAATCCTAGTAACACTGAGCTTGTGCGTCTGATCACAGCCGGTGTTTTTGATGCTGCAGTAGGCGACATTACAATTACCACAGAGAGAACAAAGATGGTTGATTTTACTCAGCCATATACCGAGTCTGGTCTAGTGGTTGTAGCATCGGTTAAGAAGACGGATTCCAATGCTTGGGCATTTTTGACGCCATTTACACCAATGATGTGGACTGTAACAGCTATCTTTTTCCTACTAGTTGGTGCAGTTGTCTGGATTCTAGAACATAGACTGAATGATGATTTTAGGGGACCTCCAAAAAAACAAGTCGCCACAATTTTGTGGTTTACTTTTTCAACTATGTTCTTTGCTCACAGGGAAAACACAGTGAGCACTCTTGGTCGTTTTGTGCTGCTTATATGGCTATTTGTAGTTCTAATAATCAACTCGAGTTACACGGCAAGCCTGACTTCAATCCTCACAGTGCAACAACTTTCTTCACCTATTAAAGGCATTGAAAGTTTAGTAAATATGAAAGAGCCTATTGGTTACTTGCAGGGCTCTTTTGCCCGATCCTATTTGATTGACGAAATCGGTATTCATGAATCCAGACTAGTTCCTCTAAAAACACCCGAAGAGACTGCGAAAGCGCTGGAAAAAGGTCCCCAAAAGGGTGGTGTTGCTGCATATATTAACGAGCGCGCTTACATAGAGCTCTTCCTTTCAAGCCGGTGTGATTTTACCATTGTAGGTCAAGAGTTTACCAAAAATGGTTGGGGATTTGCCTTTCCACCAGACTCACCATTAGCAGTTGACCTGTCAACTGCCATTTTGGAGTTAGCAGAAAATGGAGATTTACAAAGGATCCATGACAAATGGCTTTTGAGCAGTGCTTGTCGATCACAAGGTGCAAAGCTTGAAGTGGACAGACTCAATCTCAAAAGCTTTTGGGGACTTTACCTAGTCTGTGGTTTGGCATGTTTTCTTGCTCTTCTGATATATCTTATTCAGACCTTGAGGCAGTACAAAAAGCACAGTCCAGATGAACTTGAGTCTACAGGCCAAGGTCCAGGATCTTCACGCCTGCGGACTTTTCTTTCATTTGTAGATGAAAAAGAAGAGATAGTTAAGAACCGCTCCAAGAGAAGGCAAATGGAAAGGATATCATATAGAAGCACAAGTGAGGTTGGATCAACCATAGTCTCCAACAAAGATTTTTCTCAGTCATCGTTAAACAGAATTGTTTCTGAAGTATGA 2814 0.4208 MIRVWLVLLMALSNLLFSSAAVGLENSTVPEFINIGVLYSFNTSVGRIVKIAVETAVDDINSDSTILGKTKLTLSFQEDSKYRGFLSIAEALQLMATHTVAIIGPQTSTTAHVISHIANELHVPLLSFSATDPTLSSLQFPFFIRTAFNDIFQMTAIADMVSHYGWREVIVVYGDDDHGRNGIGALADKLAERRCKISFKAPMTPDAKREEITDILVQVALAESRVISSHTSTFLGPKVLSVAKSLGMMQNGYVWIATTFLTSYIDIDSPLSSDEMDNIQGVITLRMYIPDSKLKRSFVSRWTNLTRGKEGNGSLGLSTYGIFAYDTVYVLARALDTFLKQGNQITFSHDPKISELRGDSLHLDAVKIFNEGNLLCKSIYAVNMTGVTGPFRYTPDGNLANPAYEIINVIGSGTRRIGYWSNYSGLSVVPPETLYSKPPNRSYENQKLLTVFWPGETTQTPRGWVFPSNGKLLRIGVPKRVSYREFVSQVQSTDMFKGFCIDVFLSAVNLLPYAVPYKFVPYGDGQSNPSNTELVRLITAGVFDAAVGDITITTERTKMVDFTQPYTESGLVVVASVKKTDSNAWAFLTPFTPMMWTVTAIFFLLVGAVVWILEHRLNDDFRGPPKKQVATILWFTFSTMFFAHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPIKGIESLVNMKEPIGYLQGSFARSYLIDEIGIHESRLVPLKTPEETAKALEKGPQKGGVAAYINERAYIELFLSSRCDFTIVGQEFTKNGWGFAFPPDSPLAVDLSTAILELAENGDLQRIHDKWLLSSACRSQGAKLEVDRLNLKSFWGLYLVCGLACFLALLIYLIQTLRQYKKHSPDELESTGQGPGSSRLRTFLSFVDEKEEIVKNRSKRRQMERISYRSTSEVGSTIVSNKDFSQSSLNRIVSEV* 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2444 937 Pfam Bacterial extracellular solute-binding proteins, family 3 517 813 IPR001638 -
Psa4g2444 937 Gene3D - 473 583 - -
Psa4g2444 937 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 46 62 - -
Psa4g2444 937 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 107 135 - -
Psa4g2444 937 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 324 336 - -
Psa4g2444 937 SUPERFAMILY Periplasmic binding protein-like II 448 815 - -
Psa4g2444 937 Pfam Ligand-gated ion channel 814 846 IPR001320 GO:0015276|GO:0016020
Psa4g2444 937 Pfam Receptor family ligand binding region 50 411 IPR001828 -
Psa4g2444 937 CDD PBP1_GABAb_receptor_plant 34 430 IPR044440 -
Psa4g2444 937 PIRSF IGluLR_plant 1 935 IPR017103 -
Psa4g2444 937 CDD GluR_Plant 471 813 - -
Psa4g2444 937 PANTHER GLUTAMATE RECEPTOR 12 930 - -
Psa4g2444 937 PRINTS Metabotropic glutamate GPCR signature 102 128 IPR000337 GO:0004930|GO:0007186|GO:0016021
Psa4g2444 937 PRINTS Metabotropic glutamate GPCR signature 134 153 IPR000337 GO:0004930|GO:0007186|GO:0016021
Psa4g2444 937 PRINTS Metabotropic glutamate GPCR signature 153 169 IPR000337 GO:0004930|GO:0007186|GO:0016021
Psa4g2444 937 PRINTS Metabotropic glutamate GPCR signature 169 186 IPR000337 GO:0004930|GO:0007186|GO:0016021
Psa4g2444 937 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 12 930 - -
Psa4g2444 937 SUPERFAMILY Periplasmic binding protein-like I 29 465 IPR028082 -
Psa4g2444 937 Gene3D - 51 401 - -
Psa4g2444 937 Gene3D - 751 820 - -
Psa4g2444 937 Gene3D - 584 711 - -
Psa4g2444 937 SMART GluR_14 474 815 IPR001320 GO:0015276|GO:0016020
Psa4g2444 937 Gene3D - 149 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2444 Psa-Chr4 195662193 195666303 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2444 5 915 Ion Channels AT3G51480 58.760 0.0 1132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2444 K05387 - gmx:100788917 1565.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2444 4 195662193 195666303 Psa4g2444 4 195662193 195666303 ECH
Psa4g2444 4 195662193 195666303 Psa2g3377 2 378848008 378852226 ECH
Psa2g3377 2 378848008 378852226 Psa4g2444 4 195662193 195666303 ECH