Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2429 ATGGGAGGTGACGGTGCTGTTGAGGATTCTGCATCGGAGTCGAAGACCGGTGGTGAAGGTGTTAACATCAACGTTCGATGCTCCAACGGTTCAAAGTACTCCGTTCAGGTTTCGCTTGATTCCACAGTTGGATCCTTCAAGGATCTCATTGCTCGGAACTGTGATATCCCCGCACAGCAACAACGGCTTATTTACAAGGGTCGTATATTGAAGGACGATCAAACGCTACAAAGCTACGGTTTGGAGGCAGATCATGCTGTCCATTTGGTTCGTAGCTTTGCACCTGCCAACACGAGTGGTGGGACTGGGACCAATAGTAGTGGCACCAATACCACTGCGACTGATGCCAGAGGCGCTGGAGCTAATGATGTTGGGGGTGTAGGAGGGCTCGGTTTTGGAGCTTCACTGTTCCCTGGTTTAGGTACCAATGGCACTGGAGGGAATGGCTTATTCGGCGAGGGATTTCCAGATCTCGAACAAATGCAGCAACCATTTATTTCAAATCCCAATTTAATGAGAGAGTTAATGAACACACCTGCTATGCAGAATCTAGTAAGTAATCCCGAGATAGTGCGGAATCTTATAATGAACAACCCACAGATGCAAGAGCTCATGGATCGGAATCCTGAGCTAGCACACATACTTAATGATCCCAGCACTCTCCGCCAGACCCTTGAAGCTACAAGGAATCCTGAGATCATGCGTGAAATGATGAGAAATACAGACAGGGCTATGAGCAACATTGAATCATCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAACGTTCAAGAACCATTTTTAAATGCCACTACAATGGCGGGTAATACAGCAACTCAGGGTGGCCTTGCCAGGGACCAATCAACTAATCCCTCAACCACTAGTTCTGAAACAAATGCTGGTTCTACCATACCCAATGCTAACCCACTTCCTAATCCTTGGTCCTCTACCGGAACTGGAGCTCCTCAAAATAACACCAGAAGATCAACTACTGGTGTGGATGCCAGGCAGCAAGCACCTACTGGCTTAGGAGGGCTTGGTTTGCCTGGCCTTGAAGGCATGCTGGGTGGAAGTGGTATGCCAGATCCTGCTTTATTAACCCAATTAATGCAAAATCCAGCTATCTCACAAATGATGCAAAGTATGCTCTCCAACCCCCAAACTTTGAGTCAGATTCTTGGTGCTGCTAATACCGAACAACGTGGTGGCATGCCTGATATGAATTCTCTTAGAGATGTGATGCAAAATCCAGAGTTCCTTCGTTTGTTTTCATCACCTGAGACATTGCAGCAACTCATGTCTTTCCAGCAAGCCCTTCTTTCTCAGCAAGGTCAGCAACAATCGACACGGGAATCGGGTCAAACTGGTGGAGGGACTGGTCCTGTTAACAACATGGGGCTGGAGATGTTATCCAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCTGTTCCAAATAGATCAAATGAGCCACCGGAGCAATTGTATGCTACCCAGCTTTCACAACTTCAAGAGATGGGATTCTTCGACACACAAGAGAACATTAGGGCTCTCATTGCCACTTCAGGGAATGTTCATGCAGCCGTTGAACGCCTTTTGGGGAATTCTGGTCAGTAG 1623 0.4757 MGGDGAVEDSASESKTGGEGVNINVRCSNGSKYSVQVSLDSTVGSFKDLIARNCDIPAQQQRLIYKGRILKDDQTLQSYGLEADHAVHLVRSFAPANTSGGTGTNSSGTNTTATDARGAGANDVGGVGGLGFGASLFPGLGTNGTGGNGLFGEGFPDLEQMQQPFISNPNLMRELMNTPAMQNLVSNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTATQGGLARDQSTNPSTTSSETNAGSTIPNANPLPNPWSSTGTGAPQNNTRRSTTGVDARQQAPTGLGGLGLPGLEGMLGGSGMPDPALLTQLMQNPAISQMMQSMLSNPQTLSQILGAANTEQRGGMPDMNSLRDVMQNPEFLRLFSSPETLQQLMSFQQALLSQQGQQQSTRESGQTGGGTGPVNNMGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2429 540 PANTHER UBIQUILIN 1 540 - -
Psa4g2429 540 CDD UBA_PLICs 498 536 - -
Psa4g2429 540 ProSiteProfiles Ubiquitin domain profile. 21 90 IPR000626 GO:0005515
Psa4g2429 540 SUPERFAMILY UBA-like 494 536 IPR009060 GO:0005515
Psa4g2429 540 SMART ubq_7 21 92 IPR000626 GO:0005515
Psa4g2429 540 MobiDBLite consensus disorder prediction 280 339 - -
Psa4g2429 540 Gene3D - 193 251 - -
Psa4g2429 540 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 492 537 IPR015940 -
Psa4g2429 540 SMART CBM 144 185 IPR006636 -
Psa4g2429 540 SMART CBM 399 434 IPR006636 -
Psa4g2429 540 SMART CBM 198 237 IPR006636 -
Psa4g2429 540 SMART CBM 341 394 IPR006636 -
Psa4g2429 540 Gene3D - 480 540 - -
Psa4g2429 540 Gene3D - 8 103 - -
Psa4g2429 540 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 1 540 - -
Psa4g2429 540 Pfam UBA/TS-N domain 498 534 IPR015940 -
Psa4g2429 540 SUPERFAMILY Ubiquitin-like 12 103 IPR029071 -
Psa4g2429 540 Pfam Ubiquitin family 23 92 IPR000626 GO:0005515
Psa4g2429 540 MobiDBLite consensus disorder prediction 280 343 - -
Psa4g2429 540 SMART uba_6 498 536 IPR015940 -
Psa4g2429 540 CDD Ubl_Dsk2p_like 21 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2429 Psa-Chr4 194770755 194775455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2429 21 90 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.857 1.84e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2429 K04523 - gmx:100776447 822.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3396 2 380280823 380287203 Psa4g2429 4 194770755 194775455 PCT