Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2423 ATGCCGAAAGCCAAATCCGACTCCAAAGCCGTTGATAGCAGGTTGAAACGCAAAGGCGCTGGAACTGGAAGGAAGCAGTCGAAGAAAGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCCAGTGCTTTCTTCGTTTTCATGGCTGATTTCAGAGAACAGTATAAGAAGGATCATCCTAACAACAAATCTGTTGCTGCTGTTGGAAAAGCTTGTGGTGAAGAATGGAAATCTTTGTCTGAAGAGGATAAGGCTCCTTATGTTGCTAGGGCATTGAAGAAGAAAGAAGAGTATGAGATAACTCTTCAGGCCTACAATAAAAAACTGGAGGGTAAAGATGATGAAGAAGGTTCTGACAAGTCAAAATCTGAAGTCAATGATGAGGATGAAGATGAGGAGGATGAGGAGGAGGATGATGATGAGTAG 426 0.4343 MPKAKSDSKAVDSRLKRKGAGTGRKQSKKAAKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEDKAPYVARALKKKEEYEITLQAYNKKLEGKDDEEGSDKSKSEVNDEDEDEEDEEEDDDE* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2423 141 Pfam HMG (high mobility group) box 37 106 IPR009071 -
Psa4g2423 141 PRINTS High mobility group (HMG1/HMG2) protein signature 3 23 - -
Psa4g2423 141 PRINTS High mobility group (HMG1/HMG2) protein signature 71 90 - -
Psa4g2423 141 PRINTS High mobility group (HMG1/HMG2) protein signature 90 110 - -
Psa4g2423 141 Coils Coil 88 115 - -
Psa4g2423 141 MobiDBLite consensus disorder prediction 1 43 - -
Psa4g2423 141 SUPERFAMILY HMG-box 28 109 IPR036910 -
Psa4g2423 141 CDD HMGB-UBF_HMG-box 37 99 - -
Psa4g2423 141 Gene3D High mobility group box domain 21 123 IPR036910 -
Psa4g2423 141 SMART hmgende2 36 107 IPR009071 -
Psa4g2423 141 MobiDBLite consensus disorder prediction 1 19 - -
Psa4g2423 141 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 140 - -
Psa4g2423 141 MobiDBLite consensus disorder prediction 104 141 - -
Psa4g2423 141 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Psa4g2423 141 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 140 IPR031061 -
Psa4g2423 141 MobiDBLite consensus disorder prediction 104 124 - -
Psa4g2423 141 MobiDBLite consensus disorder prediction 125 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2423 Psa-Chr4 194252922 194255103 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2423 33 108 ARID Transcription Factor Family AT1G04880 30.263 8.67e-06 42.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Psa4g2423 HMG_box 8.7e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2423 K25507 K22507 gmx:100499992 205.682
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2423 4 194252922 194255103 Psa4g2423 4 194252922 194255103 ECH