Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2411 ATGCTATCAAAGTTGATGGACTTTCTAAGCGCCTGTTGGCGGAGAAGATCCTCGGACCGAAAATCATCCGATGTTTGCGGAAAGAAGGAAGGTTTGCTTTGGTACAAGGATGCCGGGCAACACTTGTTTGGTGATTACTCCATGGCGGTTGTGCAGGCTAATAACCTGCTTGAAGATCAGAGTCAGATTGAGTCTGGTCCCCTTAGTTTTCTTGATACTGGACCTTATGGTACTTTTGTGGGTGTTTATGATGGTCATGGTGGACCTGAGACTTCTCGTTTCGTTTGTGATCACCTCTTCCAGCATTTGAAACGCTTTGCGACCGAGCAGAAGTCTATGTCCGTGGAGGTTATTCGGAAGGCGTACCAAGCCACAGAAGAAGGTTTTCTGGGAGTGGTTACTAAGCAGTGGCCTATAAATCCTCAGATTGCTGCTGTGGGATCTTGTTGTTTGGTTGGTGTGATTTGTGGTGGTTCTCTCTACATTGCGAACCTTGGTGATTCTCGTGCTGTGCTTGGACGGACTGTCAAGGCAACTGGGGAGGTTTTGGCAATCCAGCTTTCGCCGGAGCATAATGTGGCCATAGAGTCTGTTAGACAAGAGATGCATTCCTTGCATCCGGATGACCCAAAAATTGTCGTTCTAAAGCACAACGTGTGGCGTGTGAAGGGTTTGATACAGGTTTCTAGATCCATAGGTGATGTATACCTTAAAAAGGCAGAGTTTAACAAGGAACCACTGTATGCTAAGTTTCGCCTTCGGGAAACTTTTAAAAGTCCAATTTTGAGCTCTGACCCATCCATTTCTACTCATGAACTACAAGAGCACGATCAATTTCTGATATTTGCCTCTGATGGTCTTTGGGAACACCTTAGCAATCAGGATGCTGTTGATATAGTTCAAAATCACCCTCACAGTGGGAGTGCTCGGAAGCTGATCAAAGTGGCTTTGCTTGAAGCGGCGAAGAAAAGAGAGATGAGGTACTCTGACCTGAAGAAAATTGATCGTGGTGTCCGCCGTCATTTTCACGATGACATCACAGTTGTAGTAGTATTTCTTGACTCGAATCTTGTCAGCAGAGCGAGCACAGTAAGAGGCCCTCCTTTGTCACTGAGGGGAGCTGGTGTTCCCTTACCGTCTAGATCTTTGGCCCCAATGGAACTTCCAGGTCCTGGCTGA 1179 0.4665 MLSKLMDFLSACWRRRSSDRKSSDVCGKKEGLLWYKDAGQHLFGDYSMAVVQANNLLEDQSQIESGPLSFLDTGPYGTFVGVYDGHGGPETSRFVCDHLFQHLKRFATEQKSMSVEVIRKAYQATEEGFLGVVTKQWPINPQIAAVGSCCLVGVICGGSLYIANLGDSRAVLGRTVKATGEVLAIQLSPEHNVAIESVRQEMHSLHPDDPKIVVLKHNVWRVKGLIQVSRSIGDVYLKKAEFNKEPLYAKFRLRETFKSPILSSDPSISTHELQEHDQFLIFASDGLWEHLSNQDAVDIVQNHPHSGSARKLIKVALLEAAKKREMRYSDLKKIDRGVRRHFHDDITVVVVFLDSNLVSRASTVRGPPLSLRGAGVPLPSRSLAPMELPGPG* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2411 392 SMART PP2C_4 37 351 IPR001932 -
Psa4g2411 392 Pfam Protein phosphatase 2C 78 323 IPR001932 -
Psa4g2411 392 CDD PP2Cc 43 353 IPR001932 -
Psa4g2411 392 ProSitePatterns PPM-type phosphatase domain signature. 79 87 IPR000222 GO:0043169
Psa4g2411 392 ProSiteProfiles PPM-type phosphatase domain profile. 45 353 IPR001932 -
Psa4g2411 392 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 5 383 - -
Psa4g2411 392 Gene3D - 25 363 IPR036457 -
Psa4g2411 392 SUPERFAMILY PP2C-like 54 354 IPR036457 -
Psa4g2411 392 PANTHER ALPHABET, ISOFORM E-RELATED 5 383 - -
Psa4g2411 392 PANTHER PPM-TYPE PHOSPHATASE DOMAIN, PROTEIN PHOSPHATASE 2C FAMILY-RELATED 5 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2411 Psa-Chr4 193058721 193065251 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2411 1 381 PP2C-type Phosphatase Gene Family AT3G51370 78.215 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2411 K01102 - gmx:100777920 702.59