Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2398 ATGGCCGAATCACCCCCTAGAAGGATTTCAAAGTCCCCTTCACCGTCGCCCTGGAAGGCCCAATCAAGATCACGGTCAAGATCAAGGTCGAGGTCTGTGCCAAGACAAAGACCAAGATCTGACTCCAGAGGCCGTGGCAGATCAAGGTCTCGGAGCCCTGAAAGGGGTGCCAATCCTACAAATCCTGGTAATACACTTTATGTTACTGGTCTATCTTCAAGGGTCACCGAGAGAGACCTAGAGGAGCATTTTTCCAAGGAGGGGAAAGTTGCTTCATGCTTTCTTGTAGTGGAGCCACGTACCCGAATTTCTCGCGGTTTTGCCTTTGTTACAATGGATTCCCACGAGGATGCTGAGCGGTGTATCAAGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACGTTACTGTAGAACGGTCAAGAAGAAAGCGTGCAAGAACTCCAACACCAGGGCACTATCTTGGGCTGAAAAATACTAGAGACTATGGCTCTCGTGGTGACAATCGTGATGACTTTCGTGGTGGCAATCGTGGTGACTTTCGCGGCGACAGTCGTGGCGACTATCGCGGCGACAGTCGTGGTGACTATCGCGGCGACAGTCGTGGTGACTTTCGGGGTGGCAGTCGTGGTGACTTTCGCGGCGACGGTCGTGGTGACTTTCGTGGTGACCGGGGAAGGAATTACGGTGGTTCTGGTCGTGGTGATTATTCACATCGTAGGTCTCCAAGGCGTTCACCATATCGTGGAGGTCAAGATCATTCACCACAGCGCTCACCCTATGTTGGGAGGTCTAGGAGGGAGAGATCCAGGTCTATTCCCCATTCTCCTTATAGCCCAGACAGGAGGTATGCTGGTGGATCTAGGTGA 867 0.519 MAESPPRRISKSPSPSPWKAQSRSRSRSRSRSVPRQRPRSDSRGRGRSRSRSPERGANPTNPGNTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSHEDAERCIKYLNQSVLEGRYVTVERSRRKRARTPTPGHYLGLKNTRDYGSRGDNRDDFRGGNRGDFRGDSRGDYRGDSRGDYRGDSRGDFRGGSRGDFRGDGRGDFRGDRGRNYGGSGRGDYSHRRSPRRSPYRGGQDHSPQRSPYVGRSRRERSRSIPHSPYSPDRRYAGGSR* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2398 288 SMART rrm1_1 65 138 IPR000504 GO:0003723
Psa4g2398 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 135 IPR000504 GO:0003723
Psa4g2398 288 MobiDBLite consensus disorder prediction 34 52 - -
Psa4g2398 288 PANTHER RNA RECOGNITION MOTIF 2 284 - -
Psa4g2398 288 SUPERFAMILY RNA-binding domain, RBD 59 171 IPR035979 GO:0003676
Psa4g2398 288 MobiDBLite consensus disorder prediction 1 65 - -
Psa4g2398 288 MobiDBLite consensus disorder prediction 139 288 - -
Psa4g2398 288 Gene3D - 8 148 IPR012677 -
Psa4g2398 288 MobiDBLite consensus disorder prediction 259 275 - -
Psa4g2398 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 142 IPR000504 GO:0003723
Psa4g2398 288 CDD RRM_RBMX_like 63 142 - -
Psa4g2398 288 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 2 284 - -
Psa4g2398 288 MobiDBLite consensus disorder prediction 162 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2398 Psa-Chr4 192492586 192495415 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2398 61 126 Eukaryotic Initiation Factors Gene Family AT3G11400 42.424 4.89e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2398 K12897 - gmx:100800398 219.55