Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2395 ATGGAGTTTGTGGCAAATCAATTCTCTTTACTGGAATTTTTTGATAATTTCGTTGAGAGGGTCAAATGGGTCGGTGTCCTCGTCGTCTCAGTTATCATCGGGAATATCTTTTCTGCGATCTTGACTTTCTGTTTCGCATTTGTGGGGACTTTTTTGGGGGCTATGACTGGAGCCTTTATAGGGCAAGAAACTGAGAGTGGCTTCATTCGGGGTGCTGCTGTTGGTGCTATGTCAGGAGCTGTTTTCTCTATTGAAGTCTTTGAATATTCTCTTGATCTTTGGCGTTCTAATGAATCTGGAATTGATTGTCTCTTATACTTGATTGATGTTATTACTAGTCTAATGAGTGGGAGACTTGTACGTGAAAGGATAGGTCCAGCGATGTTGAGTGCTGTTGAAAATGAGATGGGTGATGATGAAATGAGCTTTTATGAGTTTCAAAATTTCTTTGACATTGGCGATACAAGAGGTTTACCAGTAGTTTTAGTTGAAAAGATTCCAACAATCTCAATCACAAGTAACGACAATTTTGATGCTTCTGGCGATAGAGTTTCATGTTCAGTATGTCTTCAGGACTTGCAAGTTGGAGAGAGAGTTAGAAGGCTGCCCCATTGTCATCATATGTTTCACCTACCTTGCATTGATAAGTGGCTCATCAAGCATGGTTCTTGCCCATTATGTCGAAGAGATGTTTAA 696 0.4023 MEFVANQFSLLEFFDNFVERVKWVGVLVVSVIIGNIFSAILTFCFAFVGTFLGAMTGAFIGQETESGFIRGAAVGAMSGAVFSIEVFEYSLDLWRSNESGIDCLLYLIDVITSLMSGRLVRERIGPAMLSAVENEMGDDEMSFYEFQNFFDIGDTRGLPVVLVEKIPTISITSNDNFDASGDRVSCSVCLQDLQVGERVRRLPHCHHMFHLPCIDKWLIKHGSCPLCRRDV* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2395 231 Pfam Ring finger domain 185 228 IPR001841 -
Psa4g2395 231 SUPERFAMILY RING/U-box 165 231 - -
Psa4g2395 231 SMART ring_2 186 227 IPR001841 -
Psa4g2395 231 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 14 231 - -
Psa4g2395 231 ProSiteProfiles Zinc finger RING-type profile. 186 228 IPR001841 -
Psa4g2395 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 231 IPR013083 -
Psa4g2395 231 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 14 231 IPR044523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2395 Psa-Chr4 192299690 192301214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2395 16 231 C3H Transcription Factor Family AT5G66070 64.815 2.20e-97 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2395 - - gmx:100816939 345.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3455 2 382432231 382435065 Psa4g2395 4 192299690 192301214 PCT