Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2362 ATGGCTACCAAGTGCATGCACGTTTTTGATAGTTTGCTTCTGTGTTTTCCCACTTCTTGTAATAAAAATAGCACACCACCTAGCACAAGGAAATTCCATAGGGATGTCGAGAAAGAAGAAGAATTTCAGTTTGCAAGCACTCAATGTCTCTCATCCTATTACAGTGTCTTCGTGGTTCGCCTAGCAATCATGGTTATGCTAGCTATCTTGATTGGTCTACTCACTATCCTAACATGGCATTTCACAAAGATTTATACAACAAAGTCTCTAAATAGTCTTGCTTATGACCTACGTTACGAGCTTCTACAACGTCCGATCTTGAGGATGTGGAACATTTTGAACACTACTGCTGAAATCACAACTGCTCAAGTTAAGTTGTCTGAGTATGTTATCAGAAGCCATAGTAACCTAGCCAATCAAGCAGAACAAGTTCAGATGTATGAATCCATGAGGGCTGTAACATGGGCGCTGTTTGCTAGTCGAAAAGCTCTTGACTCGATAACTGTCAAATATAACAACGGTTTTGTCCAGGCTTTTCATAGAGACTTGAAGGATAATAATACTTTTTACATTTACACCGATCTTGCATACAATGAGACCAATTCATTTGCAGCAGATGATGAAATTTTGAATGACGAAGAAGTTCATAGCAACAAGTCTGTGATTTGGTACCGAGAACAGCTTGATCCTGTCAGCGGCGAGAAGATCGGAAAGGCAATAAAAATTGCACCAGAAAACTCTATAAGTATAGCTGGCCTATCCCAAGTACCCGACGGTGTAGCTTCATGGAACGTCTCTGTGAACAAGTTTACGGATTCACCTTTGCTTTCAGCAGCATTGCCAGTTTGGGATTCTTCTAATAAGAGCATTGTTGCAGTTGTGGGAGTCACAACTTCACTCTATAGTGTAGGACAGTTAATGAAGGAGCTAGTTGACAAACACAGTGGTCATATATATTTGACCTCGCAAAAAGGCTATTTGCTCGCAACTTCGACAAATGACCCTCTATTGACAAACTCGAGAAAGAAACCTATGCTTAAAATGGCTGTTGACTGTGATAATGAAGTAATAAGAGAGGGAGCTCAGTGGCTACAGAAAACCTACGGGAACGATTTCCCTCCGAGTCACGAGGTTCATGTAGAGAATGCCAGGCTAGGTCACCAGCAATATTACATCGATTCGTTCTACCTGAACTTGAAAAGGCTTCCTCTGGTGGGCGTAATAATCTTACCGCGGAAGCATATCATGGGGCAGGCAGATGAAAGAGCCTTCAAAACATTGGTTATTCTAATATCTGCGTCATTGTGTATTATTGTGATTGGATGTTTTTGCATTTTGATATTGACGAATGGAGTATCAAAGGAAATGAATCTTAGAGCAGAATTAATCAGTCATCTCGAAGCAAGAAGAAAGGCAGAGGCATCGAGCAACTATAAAAGCCAATTTCTCGCAAATATGAGTCATGAACTGAGGACACCGATGGCAGCAGTAATTGGATTACTCGACATTCTTTTGTCTGATGATCATCTCACAAATGAACAATGTGCGACCGTTACTCAAATAAGAAAATGCTCAACCACATTACTCCGTTTACTCAATAACATCTTGGATCTAAGCAAGGTGGAATCTGGAAAACTTGTCTTAGAAGATGCAGAATTTGACTTGGGAAGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTGCAATGCATTAACCACACTGTAGAAATTATTTTAGACCTTTCTGACGATATGCCAAAGCTAGTTCGCGGAGATTCTGCTAGAGTAGTTCAAATATTTGCAAATTTGATCAACAACTCAATCAAGTTTACTCTATCGGGTCACATTATTCTGAGAGGATGGTGTGGAAACTCGAAATCTTATGGTGATAACGAAAATTTCACCTCAGAGCCGAAGAAAATGGGGTGTTCCCCGAAAACCAGGACGAAGCAACATGAAAACCAAGCAAAGAAGGCTTCTAATAGTGATAACAAAATGATTATTTGGTTTGAAGTCGATGACACGGGTTGTGGTATTGACCCAAGTAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACTAGACTGCACGGAGGCACTGGCCTTGGTCTTTGCATTGTCAGATCCTTGGTTAATAAGATGGGTGGAGAAATCAAGATTGTCAAAAAGGAGGGCCCGGGAACACTAATGCGATTATACCTGCATCTCAACGCATCCGTGGATGCCACAGAACAACACTGTCAAGTAGATTTCACTAACAACGGCTTAGTGGTACTTCTTGCACTACATGGCAACATGAGTCGGTTAATTACGTCTAAGTGGTTACAGACAAACGGCGTTGTCACTATGGAAGCATCTGAATGGAATGGATTAACACAAATTCTAAGAGAACTATTTCATGAAAGAAATTCAAATCATAATAACAACGAATTTGACGCACCTTATCCCGCTCACGAGGTTCTGAACTCCAAATTGCTGAGCTTACAGGAATTGACAAACCCGACATTTGTCATTGCTGTTGATATTGATCTACTTGACTTGAGCACAGATATATGGAAGGAACAACTTAACTTCCTTCACAGGTACTATGGAAGAGCGAAATTCATATGGTTACATAACCATGACTCGGCCAATACCATAAAGACGGAGCTTCGCAAGAAAGGGCGAATACTAACTGTCAACAAACCTCTTTACAAAGCAAAGATGGTTCATATTTTGGAAGCCGTCATAAATGAAAGAAATGTTGAGGCACAAAAGCAAAATATGATTACTTCAAGATTCACAGTGAAAGAAGACGATTTTCATGAGAGTTTAGAGATTGATTATACTCATTGTGATGTTGGAAGCTCGGATGGCTCTGACATATCTGAAATTGGTAATTCTAATCTCGGCAGTGCCAATGGAGATAAGCAAAGAAAAGAGGTAGTTAGATTCAATCAATCGTCGATATACCAAAAAAGTAACAGCTTATTAGGATTAAGTAGTGAATATATGGAACATAATAGTCCTAGCAATGAAGCATTAATTTCAACAAGAGCGAAAGGTGAAGATTCTGAAGGTAGTGAAACAAAAAAGATTAGTGGTTCAAGTAAAGCTATAAAAGGAAATAAGTCTCTTGAAGGTCTGAGGATATTGCTCGCAGAAGATACAGCCGTAATTCAAAGGGTTGCGACCATAATGCTTGAAAAAATGGGAGCCACTGTTGTTGCTGTAGGTGACGGGAAACAGGCGGTGGAGGCTCTAAATGGCACGATTGGTGTTGAAAATTGTAGAAACACAAGAACATCAGAAACCGAGATTCTAAGTTTCCCTTCATACGACTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGATATGAAGCAACAAAAGAAATAAGGAAATCAGAAGTTGGAACTGGATTCCACATTCCAATTGTTGCTCTTACAGCTCATGCAATGTCATGTGATGAAGCCAAATGTTTGAAAGTGGGCATGGATGCTTATTTAACAAAGCCAATTGACTTTAAACTGATGGAATCTACCATTCTTTCACTCACAAGAGAGAAACCTTGA 3573 0.3994 MATKCMHVFDSLLLCFPTSCNKNSTPPSTRKFHRDVEKEEEFQFASTQCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNTTAEITTAQVKLSEYVIRSHSNLANQAEQVQMYESMRAVTWALFASRKALDSITVKYNNGFVQAFHRDLKDNNTFYIYTDLAYNETNSFAADDEILNDEEVHSNKSVIWYREQLDPVSGEKIGKAIKIAPENSISIAGLSQVPDGVASWNVSVNKFTDSPLLSAALPVWDSSNKSIVAVVGVTTSLYSVGQLMKELVDKHSGHIYLTSQKGYLLATSTNDPLLTNSRKKPMLKMAVDCDNEVIREGAQWLQKTYGNDFPPSHEVHVENARLGHQQYYIDSFYLNLKRLPLVGVIILPRKHIMGQADERAFKTLVILISASLCIIVIGCFCILILTNGVSKEMNLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILLSDDHLTNEQCATVTQIRKCSTTLLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHTVEIILDLSDDMPKLVRGDSARVVQIFANLINNSIKFTLSGHIILRGWCGNSKSYGDNENFTSEPKKMGCSPKTRTKQHENQAKKASNSDNKMIIWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRSLVNKMGGEIKIVKKEGPGTLMRLYLHLNASVDATEQHCQVDFTNNGLVVLLALHGNMSRLITSKWLQTNGVVTMEASEWNGLTQILRELFHERNSNHNNNEFDAPYPAHEVLNSKLLSLQELTNPTFVIAVDIDLLDLSTDIWKEQLNFLHRYYGRAKFIWLHNHDSANTIKTELRKKGRILTVNKPLYKAKMVHILEAVINERNVEAQKQNMITSRFTVKEDDFHESLEIDYTHCDVGSSDGSDISEIGNSNLGSANGDKQRKEVVRFNQSSIYQKSNSLLGLSSEYMEHNSPSNEALISTRAKGEDSEGSETKKISGSSKAIKGNKSLEGLRILLAEDTAVIQRVATIMLEKMGATVVAVGDGKQAVEALNGTIGVENCRNTRTSETEILSFPSYDLILMDCQMPKMDGYEATKEIRKSEVGTGFHIPIVALTAHAMSCDEAKCLKVGMDAYLTKPIDFKLMESTILSLTREKP* 1191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2362 1190 CDD REC_hyHK_CKI1_RcsC-like 1049 1182 - -
Psa4g2362 1190 ProSiteProfiles Response regulatory domain profile. 1048 1186 IPR001789 GO:0000160
Psa4g2362 1190 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 533 739 IPR036890 -
Psa4g2362 1190 Pfam Response regulator receiver domain 1049 1179 IPR001789 GO:0000160
Psa4g2362 1190 SMART HisKA_10 478 544 IPR003661 GO:0000155|GO:0007165
Psa4g2362 1190 SMART HKATPase_4 591 743 IPR003594 -
Psa4g2362 1190 SMART REC_2 1047 1182 IPR001789 GO:0000160
Psa4g2362 1190 CDD HisKA 479 540 IPR003661 GO:0000155|GO:0007165
Psa4g2362 1190 Pfam His Kinase A (phospho-acceptor) domain 479 544 IPR003661 GO:0000155|GO:0007165
Psa4g2362 1190 Gene3D - 546 746 IPR036890 -
Psa4g2362 1190 Gene3D - 1026 1185 - -
Psa4g2362 1190 MobiDBLite consensus disorder prediction 643 658 - -
Psa4g2362 1190 ProSiteProfiles Histidine kinase domain profile. 485 743 IPR005467 -
Psa4g2362 1190 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 591 741 IPR003594 -
Psa4g2362 1190 Gene3D - 466 545 - -
Psa4g2362 1190 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 465 545 IPR036097 GO:0000155|GO:0007165
Psa4g2362 1190 SUPERFAMILY CheY-like 1045 1187 IPR011006 -
Psa4g2362 1190 PRINTS Bacterial sensor protein C-terminal signature 668 682 IPR004358 GO:0016310|GO:0016772
Psa4g2362 1190 PRINTS Bacterial sensor protein C-terminal signature 686 696 IPR004358 GO:0016310|GO:0016772
Psa4g2362 1190 PRINTS Bacterial sensor protein C-terminal signature 703 721 IPR004358 GO:0016310|GO:0016772
Psa4g2362 1190 PRINTS Bacterial sensor protein C-terminal signature 727 740 IPR004358 GO:0016310|GO:0016772
Psa4g2362 1190 PANTHER OSMOSENSOR HISTIDINE KINASE 1 1187 - -
Psa4g2362 1190 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1187 - -
Psa4g2362 1190 MobiDBLite consensus disorder prediction 636 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2362 Psa-Chr4 190952991 190958017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2362 35 1187 Histidine Kinase Gene Family AT2G17820 63.582 0.0 1470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa4g2362 HATPase_c 4.6e-22 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2362 - - gmx:100801970 1847.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2362 4 190952991 190958017 Psa4g2362 4 190952991 190958017 ECH
Psa2g3480 2 383462725 383469070 Psa4g2362 4 190952991 190958017 PCT