Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2341 ATGAATGTCGGTGATGTTCCCGCAAATGTTATTGAAAATCCAATTGATGTTGATTATGATCAAGACTCTAAAAGAGACGAGGTAGTTAACACCGGAAAAGCTCATAGACGTTCCTGTGCTTGGGATCATTTTGTAAAACAAGGTAAGAGGGCTAAGTGTATTCACTGTAGTAGGTCATATGTTGCTGATGGTAATACACATGGAACCTCAAATCTCAATAAACATTTTAAGAAATGTCCTAAGAATCCAAATAGGGTAATGGATAAGGCACAAAAAAGTATTGTACTTGAGAAGCAAGTAGAGGGTGATATTAATATGTCTTTAAAGATTTTTGAATTTAATCAAGAAGTGTGTAGGTTAGAGCTTGCTAAAATGATTATTATTGTTGAGTTTCCCTTTAAACATGTTGAAGGTGTTGGATTTAAAGGTTTTATGATTCGTGCTCAACCTCGTTTCAAAATTCCTAGTCGTGTAACGGTTACTAGATATCGATTCATCGAGTGTTCAGTGTTTAGGGTTTTTTTGAGGTTAAAATCAATGGCGGAGGAGAGAATCTCGGGTGTGGTGCAATGGTTCAACAGTGGCAAAGGCTTCGGTTTCATCAAACCTGATGACGGCAGCGAAGATCTCTTTGTTCATCAATCATCCATCAGATCTGATGGATTCCGCACCCTTGCCGAAGGCGATCGTGTCGAATTCACCATCGCCACCGGCGACAATGAAAAAACCAAGGCTGTTGATGTCACCGGTCCTAACGGCGCTCCTTTGCAGTCCAGGCAGGACTCTTATGGCGGTGGAGGTGGCGGCCGTGGATTCGGTGGTGGATTTAGGGGTGCTGAGAGACGTAACGGCGGCGGCGGCGGCGGCGCTGGCTGTTACAACTGTGGTGACACTGGTCACATCGCTAGAGAGTGTAACCGGAGCAATAATTCCGGTGGAGGTGGAGGCGCTGCTGGTGCCGGCTGTTACAATTGCGGTGACACTGGTCACATCGCTAGGGATTGCAACCGGATCAATAATTCCGGTGGTGGTGGAGGAGGTGCTTGTTATACCTGCGGCTCTTTTGGTCATATAGCTAGGGATTGCACTCGCGGAGGCAATATTGGAGGTGGATTTGACCGCAGCAGTGGAGGCGCCACTTCTTGCTACAGATGTGGTGGAATCGGGCACATTGCAAGAGACTGCGCCACTCCCAGCGACCGAAGTGGCGGAGGTGGTGGATGCTATAAGTGCGGCGAAGTTGGTCACATAGCCAGGGATTGCAACATTGAAGGTGGCAGGTTCGATGGTGGCAACGGTGGTGGAAGATTTGGTGGTGGCAACAATGGAAGGTTTGGTGGTGGCAATGGAGGAACCAACACATGCTTCAATTGTGGGAAGCCAGGTCATTTTGCTAGGGAGTGCGTTGAGGCTTCTGTTTGA 1422 0.4726 MNVGDVPANVIENPIDVDYDQDSKRDEVVNTGKAHRRSCAWDHFVKQGKRAKCIHCSRSYVADGNTHGTSNLNKHFKKCPKNPNRVMDKAQKSIVLEKQVEGDINMSLKIFEFNQEVCRLELAKMIIIVEFPFKHVEGVGFKGFMIRAQPRFKIPSRVTVTRYRFIECSVFRVFLRLKSMAEERISGVVQWFNSGKGFGFIKPDDGSEDLFVHQSSIRSDGFRTLAEGDRVEFTIATGDNEKTKAVDVTGPNGAPLQSRQDSYGGGGGGRGFGGGFRGAERRNGGGGGGAGCYNCGDTGHIARECNRSNNSGGGGGAAGAGCYNCGDTGHIARDCNRINNSGGGGGGACYTCGSFGHIARDCTRGGNIGGGFDRSSGGATSCYRCGGIGHIARDCATPSDRSGGGGGCYKCGEVGHIARDCNIEGGRFDGGNGGGRFGGGNNGRFGGGNGGTNTCFNCGKPGHFARECVEASV* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2341 473 SMART bed5 35 82 - -
Psa4g2341 473 ProSiteProfiles Cold-shock (CSD) domain profile. 184 250 IPR002059 GO:0003676
Psa4g2341 473 ProSiteProfiles Zinc finger CCHC-type profile. 292 305 IPR001878 GO:0003676|GO:0008270
Psa4g2341 473 ProSitePatterns Cold-shock (CSD) domain signature. 198 217 IPR019844 -
Psa4g2341 473 SUPERFAMILY Retrovirus zinc finger-like domains 284 337 IPR036875 GO:0003676|GO:0008270
Psa4g2341 473 ProSiteProfiles Zinc finger CCHC-type profile. 408 421 IPR001878 GO:0003676|GO:0008270
Psa4g2341 473 SMART csp_8 186 251 IPR011129 GO:0003676
Psa4g2341 473 SMART c2hcfinal6 348 364 IPR001878 GO:0003676|GO:0008270
Psa4g2341 473 SMART c2hcfinal6 291 307 IPR001878 GO:0003676|GO:0008270
Psa4g2341 473 SMART c2hcfinal6 407 423 IPR001878 GO:0003676|GO:0008270
Psa4g2341 473 SMART c2hcfinal6 454 470 IPR001878 GO:0003676|GO:0008270
Psa4g2341 473 SMART c2hcfinal6 381 397 IPR001878 GO:0003676|GO:0008270
Psa4g2341 473 SMART c2hcfinal6 321 337 IPR001878 GO:0003676|GO:0008270
Psa4g2341 473 Gene3D - 373 432 - -
Psa4g2341 473 PANTHER COLD SHOCK DOMAIN PROTEIN 2 373 471 - -
Psa4g2341 473 PANTHER COLD SHOCK DOMAIN PROTEIN 2 180 371 - -
Psa4g2341 473 SUPERFAMILY beta-beta-alpha zinc fingers 38 81 IPR036236 -
Psa4g2341 473 Pfam Zinc knuckle 348 363 IPR001878 GO:0003676|GO:0008270
Psa4g2341 473 Pfam Zinc knuckle 291 305 IPR001878 GO:0003676|GO:0008270
Psa4g2341 473 Pfam Zinc knuckle 453 468 IPR001878 GO:0003676|GO:0008270
Psa4g2341 473 Pfam Zinc knuckle 407 421 IPR001878 GO:0003676|GO:0008270
Psa4g2341 473 Pfam Zinc knuckle 382 396 IPR001878 GO:0003676|GO:0008270
Psa4g2341 473 Pfam Zinc knuckle 321 335 IPR001878 GO:0003676|GO:0008270
Psa4g2341 473 ProSiteProfiles Zinc finger CCHC-type profile. 455 468 IPR001878 GO:0003676|GO:0008270
Psa4g2341 473 ProSiteProfiles Zinc finger CCHC-type profile. 382 395 IPR001878 GO:0003676|GO:0008270
Psa4g2341 473 ProSiteProfiles Zinc finger CCHC-type profile. 322 335 IPR001878 GO:0003676|GO:0008270
Psa4g2341 473 PRINTS Cold shock protein signature 187 202 IPR002059 GO:0003676
Psa4g2341 473 PRINTS Cold shock protein signature 208 217 IPR002059 GO:0003676
Psa4g2341 473 PRINTS Cold shock protein signature 223 241 IPR002059 GO:0003676
Psa4g2341 473 SUPERFAMILY Retrovirus zinc finger-like domains 376 423 IPR036875 GO:0003676|GO:0008270
Psa4g2341 473 SUPERFAMILY Retrovirus zinc finger-like domains 441 468 IPR036875 GO:0003676|GO:0008270
Psa4g2341 473 Pfam 'Cold-shock' DNA-binding domain 186 250 IPR002059 GO:0003676
Psa4g2341 473 CDD CSP_CDS 185 250 IPR002059 GO:0003676
Psa4g2341 473 Gene3D - 178 262 IPR012340 -
Psa4g2341 473 Gene3D - 318 371 - -
Psa4g2341 473 Gene3D - 277 317 - -
Psa4g2341 473 PANTHER COLD SHOCK DOMAIN-CONTAINING PROTEIN 3-LIKE 373 471 - -
Psa4g2341 473 PANTHER COLD SHOCK DOMAIN-CONTAINING PROTEIN 3-LIKE 180 371 - -
Psa4g2341 473 ProSiteProfiles Zinc finger BED-type profile. 35 86 IPR003656 GO:0003677
Psa4g2341 473 ProSiteProfiles Zinc finger CCHC-type profile. 349 364 IPR001878 GO:0003676|GO:0008270
Psa4g2341 473 SUPERFAMILY Nucleic acid-binding proteins 181 253 IPR012340 -
Psa4g2341 473 Gene3D - 444 472 - -
Psa4g2341 473 SUPERFAMILY Retrovirus zinc finger-like domains 314 365 IPR036875 GO:0003676|GO:0008270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Psa4g2341 CSD 5.7e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2341 K09250 - gmx:100806783 296.204