Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2339 ATGCTCTCAGTATCTTCTCTCTCACCTCTCAGCACCGTCGCCACTTTCTCCGGCAAAACCATCTCATCAAAACCGTGCCACGTCAGACCGCGAAGAATATTCGTTTCTGCCACCGCCACTACAACCGAAGCTATCTCTTCTCAGCTACCCCGCGGCATGGCTTCCGGCTCGCTTTACGAGATTCTTGGAATTGCGGCAGCCGCTTCCGATCAGGAAATTAAGACAGCGTACCGGCGTCTCGCGAGAGTTTCTCACCCTGACGTGGCGGCGGTTCATCGGAAGAATTCTTCGGCGGATGAGTTCATGAAGATTCATGCTGCGTACTCGACTCTGTCGGATCCCGAAAAGCGTGCAAACTATGATAGAAGTTTGTTCCGTCGTCGGCAACCGCTGACGGCGAGTAGATTTTCTGGATACAGAGTTCGGAACTGGGAAACGGACCAGTGCTGGTAG 453 0.5342 MLSVSSLSPLSTVATFSGKTISSKPCHVRPRRIFVSATATTTEAISSQLPRGMASGSLYEILGIAAAASDQEIKTAYRRLARVSHPDVAAVHRKNSSADEFMKIHAAYSTLSDPEKRANYDRSLFRRRQPLTASRFSGYRVRNWETDQCW* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2339 150 PANTHER - 9 150 - -
Psa4g2339 150 ProSitePatterns Nt-dnaJ domain signature. 101 120 IPR018253 -
Psa4g2339 150 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 9 150 - -
Psa4g2339 150 Pfam DnaJ domain 58 121 IPR001623 -
Psa4g2339 150 PRINTS DnaJ domain signature 59 77 IPR001623 -
Psa4g2339 150 PRINTS DnaJ domain signature 77 92 IPR001623 -
Psa4g2339 150 PRINTS DnaJ domain signature 96 116 IPR001623 -
Psa4g2339 150 SMART dnaj_3 56 116 IPR001623 -
Psa4g2339 150 CDD DnaJ 59 113 IPR001623 -
Psa4g2339 150 SUPERFAMILY Chaperone J-domain 54 127 IPR036869 -
Psa4g2339 150 ProSiteProfiles dnaJ domain profile. 57 124 IPR001623 -
Psa4g2339 150 Gene3D DnaJ domain 48 138 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2339 Psa-Chr4 189068415 189069429 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2339 59 121 C2H2 Transcription Factor Family AT1G74250 43.939 2.14e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2339 - - cam:101494220 206.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2339 4 189068415 189069429 Psa4g2339 4 189068415 189069429 ECH
Psa2g3505 2 384722726 384724882 Psa4g2339 4 189068415 189069429 ECH