Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2301 ATGGCAGAAACAAAGGACGAAGCTTACGAGGAAGAGCTTCTCGACTACGAAGAGGAAGAAGACAAAGCTCCCGACACCAACGGAGCTAAAGTCAACGGTGAAGCTACCAAGAAGGGCTATGTCGGAATCCACAGTTCAGGCTTTAGAGACTTTCTTCTCAAACCAGAGCTTCTTCGGGCTATTGTCGACTCAGGATTTGAACATCCATCTGAAGTGCAACATGAGTGCATACCTCAAGCAATCCTAGGAATGGACGTAATTTGTCAAGCGAAATCTGGAATGGGAAAGACTGCTGTCTTTGTTCTCTCAACTTTGCAGCAGATTGATCCTGTTCCAGGTCAAGTATCTGCACTCGTTCTGTGTCATACAAGAGAACTAGCTTATCAGATATGCCATGAGTTTGAGAGGTTTAGTACCTACTTAACCGATCTGAAGGTTGCTGTCTTTTATGGTGGGGTTAATATCAAAGTTCACAAGGATCTGTTGAAAAATGAGTGCCCTCAAATTGTTGTCGGAACGCCTGGAAGAATACTAGCATTGGCTAGGGATAAAGATCTGTCTTTGAAGAATGTTAGACATTTTGTTTTAGATGAATGTGATAAGATGCTCGAATCACTAGACATGAGGAAAGATGTTCAAAACATTTTCAAATTGACTCCCCATGATAAGCAAGTTATGATGTTTTCAGCAACACTCAGCAAGGAAATCCGCCCAGTCTGCAAAAAGTTTATGCAAGATCCTATGGAAATTTATGTTGATGATGAAGCCAAGTTAACCCTTCATGGACTTGTTCAGCACTACATCAAATTGAAAGAGGAGGAGAAAAACCGCAAATTGAATGATCTTCTTGATGCTCTAGACTTCAACCAAGTTGTTATCTTTGTGAAAAGTGTTAGTAGAGCTGCTGAGCTGGACAGACTACTCATAGAATGCAATTTTCCATCTATATGCATTCACTCTGGCATGTCCCAGGAAGAAAGGTTAAAGCGTTATAGAGGTTTCAAGGAGGGGCATACAAGGATTCTTGTTGCTACAGATTTGGTTGGTAGAGGGATTGACATTGAACGTGTCAATATTGTTATAAACTATGACATGCCTGATTCTGCAGACACTTACTTGCACAGTTGGCCGTGCTGGAAGATTTGTACCAAAGGCCTTGCAATCACATTTGTTTCATGTTCTACTGATGTTGATGTTCTCAACAATGTTCAGTCAAGTTTGAAAATAGATATAAAGCAGCTTCCTGAGCAGATTGATACTTCTACTACAAGGGCAACTTTGAGCTGTTCAGATGGTATGGGTGCCTCATCTTCTGAATTTGTCGCAGAGTATTCTGGAAGTGCAACCGATGATTTATCAGCTGATTCCAGTCCTTTATGCCAGACTAGGCACTTACTAATGTTAGATACTCTGTAG 1416 0.4117 MAETKDEAYEEELLDYEEEEDKAPDTNGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLTDLKVAVFYGGVNIKVHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFVLDECDKMLESLDMRKDVQNIFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDRLLIECNFPSICIHSGMSQEERLKRYRGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHSWPCWKICTKGLAITFVSCSTDVDVLNNVQSSLKIDIKQLPEQIDTSTTRATLSCSDGMGASSSEFVAEYSGSATDDLSADSSPLCQTRHLLMLDTL* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2301 471 SMART helicmild6 302 374 IPR001650 -
Psa4g2301 471 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 28 421 - -
Psa4g2301 471 Gene3D - 42 258 IPR027417 -
Psa4g2301 471 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 28 421 - -
Psa4g2301 471 SMART ultradead3 65 266 IPR014001 -
Psa4g2301 471 CDD SF2_C_DEAD 263 391 - -
Psa4g2301 471 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 77 250 IPR014001 -
Psa4g2301 471 Pfam Helicase conserved C-terminal domain 276 375 IPR001650 -
Psa4g2301 471 Pfam DEAD/DEAH box helicase 71 236 IPR011545 GO:0003676|GO:0005524
Psa4g2301 471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 376 IPR027417 -
Psa4g2301 471 MobiDBLite consensus disorder prediction 1 31 - -
Psa4g2301 471 Gene3D - 259 426 IPR027417 -
Psa4g2301 471 MobiDBLite consensus disorder prediction 1 22 - -
Psa4g2301 471 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 262 422 IPR001650 -
Psa4g2301 471 CDD DEADc_DDX39 45 252 - -
Psa4g2301 471 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 46 74 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2301 Psa-Chr4 187356538 187360850 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2301 22 422 Eukaryotic Initiation Factors Gene Family AT5G11200 79.233 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2301 K12812 - gmx:100808957 773.467