Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2297 ATGGTCATTAGAAAATCCAACAAGCTACCTCAACCTGACGTTATTATCAAGCAAATTCTTAAAAGATGTTCAAGTTTCGGCAAGAAACAGGGTTACAATGAAGAGGGTCATCCTGAAGATGTACCAAAAGGTCACTTTGTTGTTTATGTTGGAGAAAACAGAACAAGATATGTTGTTCCAATTTCATGGTTGCCTCATCCACAGTTTCAGTGTTTGCTTCAAATAGCTGAGGAAGAATTTGGATTCAATCATGACATGGGACTTACAATTCCTTGTGATGAAGTTGTTTTTGAGTATCTTACTTCATTGATCACATAG 318 0.3648 MVIRKSNKLPQPDVIIKQILKRCSSFGKKQGYNEEGHPEDVPKGHFVVYVGENRTRYVVPISWLPHPQFQCLLQIAEEEFGFNHDMGLTIPCDEVVFEYLTSLIT* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2297 105 Pfam Auxin responsive protein 28 104 IPR003676 GO:0009733
Psa4g2297 105 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 6 104 IPR003676 GO:0009733
Psa4g2297 105 PANTHER AUXIN-INDUCED PROTEIN 15A-LIKE 6 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2297 Psa-Chr4 187093653 187093970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2297 4 104 Calmodulin-binding Proteins AT3G43120 42.718 3.90e-19 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2297 K14488 - gmx:100500218 180.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3522 2 385833050 385834219 Psa4g2297 4 187093653 187093970 ECH
Psa4g2297 4 187093653 187093970 Psa4g2297 4 187093653 187093970 ECH
Psa7g4170 7 339364422 339365909 Psa4g2297 4 187093653 187093970 ECH
Psa2g3522 2 385833050 385834219 Psa4g2297 4 187093653 187093970 PCT