Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2292 ATGAAGCGCACGAGGAAATCTAACAGGGTTTCGTGGGCTTCTGCTGCTAATCTATGTCAGGTAAAATTGTTCTTGTCGGAAGATTTCCCGTCAAAAGTTGGTCTGGTATCGCACGATAATCTTGAAGCAAGGGCGTCGTCATTGTTGAGTTCCAGTACTAATGATTCTATTGATTTACCTCCTGGGTTTGAAAGTAGTCATTTCCTGAACCAATCAAAGGTTGAATTCTCCCACATTCCAAAGATAAAATGGGAATGCCCTCGACCGTTTGTTTTCAGTTCTCGTTGGCTACTTGCAGCTGGTGAACAAAGTAGGGAGAAAGATGTTCAGAAGCTGAGAGAAATAAGAGTCCTTGAAGCAGTTTATCCCAGACTCTCTGCCATTCCTCCTAGCCCTTCTGTTTCTCTGGATGTAGAAGAAGAAGATTATGATGGTAGCATTACTCCTTTGATCCCTATCATTCCCATTGAGGAGGAGGAAGAGGCCATGGCTAATTCGCCTGAATCGGATGCAGCAGCGAACCCTCACCCCAATGTTCAGTCTCCGAATTTGCATCAATATATGTCAGCAACAAGTTCCATTAATTCAGACCGTAACACCTCTGGCACTGTCTCCCCGGCTGCCTGTTTATTGCCTTTCGCCGGGGTATCTTCTGGTTTGGAAGCTGATGTAGTGGCAGCCTCTGATGCTGTGGCAGCCATCCTTAAGAGTAATGAGCATGGAGGCTTAATTGATATGGATCTACTAGTTAAAATATTTAGTGACCCAAAAATGATTGAGAATTTGATCAATGAAGCCTCCAATGTAGGTGCATCCTCAAATGCAGTGTCTTTACCCACTTCTGGATTGAAATCTTCTATTCCATCATCTCCTTTTTTTACATCTGCACCTGACATGTCAGCTTCTAGGAATACACACATTAGTTCTGTGGGTTTTTCTGGGTTGAATCCTGCAAGTCCATCAGTTTCATATTTGAATTCTACATCTGGTCAGCAACTGCATCAGTTCCATTTTCTAGGCCGACGGTGTCTGGTCAACCAATTCATTTCGGGCATCTGGGGCGAAGCGACCCGCCTAGTCGACAATAATTTTCACATGTCAAATGGAATGCCAACTGCTTTAAATTCCCAGCCTCAGCCAGATTCATTTCGGGCATCTGGGGCGAAGCGACCCGCCTCTTTTGCTTTTGCTTCCATGTCTTCTAGTGAACCAAGCACAGCTCCATTGCCTCCTCCTACCGGGAACCTGCATACTGTTTTCAACCATGGACAAACCAGTGCTAGAACAAAGCCGTATCAAACAAGTACAGGTTCAGCATCTGCTGTAAAGGATGCCAACTATTATAAAAACCTCATTAGGCAACATGGTGCAGATGGACAAGATAAGCCGGACTCTCAAATAGGTAACCGTCATAGTAACTTCCAAGATATGAAATTGGGACATAATAATCAAGGAGAAGTGAAACACAAAAGCAAGAAACCATGCATTTATTTTAATAGCCAAAGGGGGTGCAGGAATGGTGCCAGTTGCCCCTTTCAGCATGATGTTTCAGCTCAGTCGGGAGCTGGTAACTTACTAGGGCCGAAGAATGTTAAAAGTTTTAAAATGTGA 1611 0.4407 MKRTRKSNRVSWASAANLCQVKLFLSEDFPSKVGLVSHDNLEARASSLLSSSTNDSIDLPPGFESSHFLNQSKVEFSHIPKIKWECPRPFVFSSRWLLAAGEQSREKDVQKLREIRVLEAVYPRLSAIPPSPSVSLDVEEEDYDGSITPLIPIIPIEEEEEAMANSPESDAAANPHPNVQSPNLHQYMSATSSINSDRNTSGTVSPAACLLPFAGVSSGLEADVVAASDAVAAILKSNEHGGLIDMDLLVKIFSDPKMIENLINEASNVGASSNAVSLPTSGLKSSIPSSPFFTSAPDMSASRNTHISSVGFSGLNPASPSVSYLNSTSGQQLHQFHFLGRRCLVNQFISGIWGEATRLVDNNFHMSNGMPTALNSQPQPDSFRASGAKRPASFAFASMSSSEPSTAPLPPPTGNLHTVFNHGQTSARTKPYQTSTGSASAVKDANYYKNLIRQHGADGQDKPDSQIGNRHSNFQDMKLGHNNQGEVKHKSKKPCIYFNSQRGCRNGASCPFQHDVSAQSGAGNLLGPKNVKSFKM* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2292 536 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 1 535 - -
Psa4g2292 536 ProSiteProfiles Zinc finger C3H1-type profile. 490 517 IPR000571 GO:0046872
Psa4g2292 536 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45-RELATED 1 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2292 Psa-Chr4 186803459 186811534 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2292 81 152 Homeobox Transcription Factor Family AT4G02560 41.667 6.33e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa4g2292 zf-CCCH 0.00029 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2292 - - cam:101501407 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2292 4 186803459 186811534 Psa4g2292 4 186803459 186811534 ECH