Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2291 ATGAGAACTCGAAATGCAGATTCGTCCTCCAAATCCGTAACCCCTAAGAAGACACCGCCGGCGAGAAAATCCGCCGGAGAATCTCCCGTCGCGAAGCGCACACCTCCATCCAAAACCAGAAACGCCAAGAAGACGGAGGCATCGCCTGCAACCGAGCCTATAACCGATTCCAATCCGGATCAATCTGAGCAGCAAAAATCATTAGCCAGTGCTACTACCGCTACGAAATCTGCGAAGAGGAAAACATCAGGTAAGTCGAGGACAACAGTGGTTGCCACCACTCCAAAGTTGGAAGAGCAATTGGAGGCTGAAGCTGATGAAACTAGAGATGTAGATGATTGTGAAGCGGCAGAGAAAGTGGTAGAAGCTGGAAATGTTAGCGATATTGGTGCGGATGATGTGGAGAGTGAAAAAGAAGGGGGACAAAGTTTTTTCTCTGTTGGATTGTTGGATGGGAAGGAACAAAAGCCCATGGAAGTGGATGAATCTGTTGTTGGAAAAGTTTGTGAATTGGTCGAAAAGGGGAAGAGCATGGAAGACAGTGAACCGACTGTTTCTCAAGAGGCTCCTCTTTCTTTTAAACAACCAGGATGCAATGTCATGGATCTCAATATGTCTGTGGCTGATAATGAAGATAATACTGCTGCAAAGGAAGGAGGGGAAGTGTTGAAAGAGGAAGAATTGAATATACCGGAAGAAGAGAGAGGAAAGGAAGAGTTGATAGCAGACGAGGGAGCAAGAGGAAAGGAAGAGTTGATAGCAGACGAGGGAGCAAAAGGAAAGGATGAGTTGAACGATCAAGGAGAGAAAGGAAAAGAGTTGAACCAACAAAAACGAGATAAAGAAATTTTAGAGTTTAAAATGCAGGATAGAGAAAAAGGAAAGGAGGAGTTGCTAGAACAGGAAGGAAAGAAGGCAATGGAAGAGTTTAAAATACAGGAAGGAGAAAAAGGAAAGGAAGAGCTGAAAGAACAGGAAGTAGAGAAAGGAAAAGAAGAGTTGAAGGAACATGAAGAAGAGAAGGGAAAGGAAGTGTTAAAAGAACCAGTAGGAGAGAAAGAAAAAGAAGAGTTTAAAGTACACAAAGCACAGAAAGACAATGAAAATTTTAAAGAAGAGAAATTAGAAAACGCAAAAGGAGAGGAAACAAACATTATTGGACATGAAGAGCACTTTAGTGTAGAAGTACAAGGCCAACTGCAAAAAGAATTTGATCCCAAAAAGTATGGTGTTGAAGGGCCAAAGAGTGGTGAATTGATAGATCTTGAAGAACAAGGGAGGGTGGAGCTTGAGGAGGAAGATCCAGAAGAAGATCCAGAGGAACTGCCCGAACAAACCGAGACATTGGATGAAGAGCATATAGATTTTGAAGATATTGCAAAGCAGCGAAAGATTAGGAAAGAGCATGAGATATTTGTTGGTGGGTTGGATCGTGATGCTACAGAGGAAGATCTGAGAAAGGTTTTTCAGAGGATTGGGGAGGTAGTGGAAGTCAGGTTGCATAAAAATTCGTCAACAAATAAAAATAAGGGATACGCTTTTGTGAAGTTTGCCATTAAGGAGCACGCAAAGAAAGCTTTGTCTGAAATGAAGAACCCTGTTATACATGGTAAACGATGTGGCACCGCACCTAGTGAGGATAATGACACATTATTCTTGGGAAATATTTGCAATAAATGGACAAAAGAAATTATTAAACAGAAGCTGAAGGATTATGGCGTAGAAGGGGTTGAAAACATTACACTCGTACCAGATGTTCAACATGAAGGCTTGAGCCGGGGCTTTGCATTCCTTGAGTTTTTTTGTCATGCTGATGCCATGCTTGCATACAAGAGACTTCAAAAGCCTGATGTCATCTTTGGTCATGCTGAGCGAACTGCTAAGGTAGCCTTTGCCGAACCGGTACATGAACCAGACCCAGAGATAATGGCACAAGTGAAGTCTGTGTTTATTAATGGTCTCCCTCTTCACTGGGAGGAAGATCATGTGAGGGAGCTGTTGAAATCTTACGGTGATATTGTAAAAGTTGTTTTGGCGAGGAATATGTCCACATCTAAGAGAAAAGATTATGGATTTGTGGATTTTTCTACACATGAAGCTGCTTTAGCTTGTGTTGATGGTGTAAATAAATCAGAATTGGGAGATGGGGCATCAAAGATAAAAGTGAGAGCTAGGCTTTCAAACCCTTTGCCTAAAATGCAGGCTGTCAAGGGTGACATGTGTGGTGGCCTCCGCATTGGTCAGGCTAGGAGTGAAGCTCACCCAAGATCAGAAATAGGTCTTGGGCGGGGGCGAGGAAGACATCCCTTCAATAACAGGGGAAATTTCAACAGAGGCAGGAGTTTCTATCATCATGGGGGCCGCAGTCAAATTGGAAGGGGTTTTTGGGACGACCCTGATTTTAGTATGCATCCGGATTTCCATCAGCGGCAATTTGGTCCACAAGGAGCTATGGGGGGTGGACATTATGCAGGTAGTCTAGGTGGTGCTCCATTTGCTGGTCCATCTAGACATTATTATGATAGAGAATGGTATGGTTTCCCTGATGGAGGCGCTGGTGAGCCTATTCCTCCAAGAAGGCCATGCTCTCCAGGGGGACAGTTTGACATGCCTTTTATGGGAAGGCATGTTGATGATCCATATCTGTATGATGACAATATGCGTGGAATAAAACGTCCATTTTATATGACTGATCCTGAACCTGATTACATGGGGCCTAACAGAGTTCGCCCACGATTTGATTATGCAGATCCATCTATATTTCATGGAACTCAATACCATGATTATGCTGGGGCTGGCAGCAGGCAGTACCCACATGACTATTATGGTTCTCATCACGGCAGAGGTCCATACTCATCATTCTATGGGGGCAATGGCCCTCATGACGACAGATACTATTATTAG 2904 0.4353 MRTRNADSSSKSVTPKKTPPARKSAGESPVAKRTPPSKTRNAKKTEASPATEPITDSNPDQSEQQKSLASATTATKSAKRKTSGKSRTTVVATTPKLEEQLEAEADETRDVDDCEAAEKVVEAGNVSDIGADDVESEKEGGQSFFSVGLLDGKEQKPMEVDESVVGKVCELVEKGKSMEDSEPTVSQEAPLSFKQPGCNVMDLNMSVADNEDNTAAKEGGEVLKEEELNIPEEERGKEELIADEGARGKEELIADEGAKGKDELNDQGEKGKELNQQKRDKEILEFKMQDREKGKEELLEQEGKKAMEEFKIQEGEKGKEELKEQEVEKGKEELKEHEEEKGKEVLKEPVGEKEKEEFKVHKAQKDNENFKEEKLENAKGEETNIIGHEEHFSVEVQGQLQKEFDPKKYGVEGPKSGELIDLEEQGRVELEEEDPEEDPEELPEQTETLDEEHIDFEDIAKQRKIRKEHEIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFAIKEHAKKALSEMKNPVIHGKRCGTAPSEDNDTLFLGNICNKWTKEIIKQKLKDYGVEGVENITLVPDVQHEGLSRGFAFLEFFCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPVHEPDPEIMAQVKSVFINGLPLHWEEDHVRELLKSYGDIVKVVLARNMSTSKRKDYGFVDFSTHEAALACVDGVNKSELGDGASKIKVRARLSNPLPKMQAVKGDMCGGLRIGQARSEAHPRSEIGLGRGRGRHPFNNRGNFNRGRSFYHHGGRSQIGRGFWDDPDFSMHPDFHQRQFGPQGAMGGGHYAGSLGGAPFAGPSRHYYDREWYGFPDGGAGEPIPPRRPCSPGGQFDMPFMGRHVDDPYLYDDNMRGIKRPFYMTDPEPDYMGPNRVRPRFDYADPSIFHGTQYHDYAGAGSRQYPHDYYGSHHGRGPYSSFYGGNGPHDDRYYY* 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2291 967 Gene3D - 636 791 IPR012677 -
Psa4g2291 967 CDD RRM_SF 649 723 - -
Psa4g2291 967 MobiDBLite consensus disorder prediction 231 386 - -
Psa4g2291 967 CDD RRM_SF 551 614 - -
Psa4g2291 967 MobiDBLite consensus disorder prediction 1 112 - -
Psa4g2291 967 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 649 715 IPR000504 GO:0003723
Psa4g2291 967 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 471 539 IPR000504 GO:0003723
Psa4g2291 967 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 551 619 IPR000504 GO:0003723
Psa4g2291 967 MobiDBLite consensus disorder prediction 424 447 - -
Psa4g2291 967 Gene3D - 548 633 IPR012677 -
Psa4g2291 967 MobiDBLite consensus disorder prediction 41 95 - -
Psa4g2291 967 PANTHER NUCLEOLIN-LIKE ISOFORM X1 460 960 - -
Psa4g2291 967 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 460 960 - -
Psa4g2291 967 SUPERFAMILY RNA-binding domain, RBD 470 614 IPR035979 GO:0003676
Psa4g2291 967 SMART rrm1_1 648 723 IPR000504 GO:0003723
Psa4g2291 967 SMART rrm1_1 550 627 IPR000504 GO:0003723
Psa4g2291 967 SMART rrm1_1 470 543 IPR000504 GO:0003723
Psa4g2291 967 CDD RRM_SF 471 539 - -
Psa4g2291 967 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 469 547 IPR000504 GO:0003723
Psa4g2291 967 SUPERFAMILY RNA-binding domain, RBD 637 728 IPR035979 GO:0003676
Psa4g2291 967 Coils Coil 353 381 - -
Psa4g2291 967 Coils Coil 320 340 - -
Psa4g2291 967 MobiDBLite consensus disorder prediction 425 447 - -
Psa4g2291 967 Gene3D - 415 545 IPR012677 -
Psa4g2291 967 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 647 727 IPR000504 GO:0003723
Psa4g2291 967 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 549 634 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2291 Psa-Chr4 186748205 186753030 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2291 470 715 Eukaryotic Initiation Factors Gene Family AT1G71770 24.324 8.62e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2291 - - gmx:100819035 1099.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2291 4 186748205 186753030 Psa4g2291 4 186748205 186753030 ECH