Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2289 ATGGACTCGTCGCAAAACAAAATGCAGGAAATGGAAAATTTCGCTGAGGAGAATCCAAACTCGTTTTCAGTATATGATTCTAGTCTTACTTCCTTGTTTTTCAATGACGAACTAGATCCTAAATCAATCGATGAATTTCTAGCGGTTTCTACTACTGTTAACACCTTTGGTTCCGAGTTGAATGGATCAGAACCGAATAATGAAGTTCGTTCTATAGGTACTACTGAGTTATGTGACCCATCCAAAGAGGCTGCTGTCACGGTTAGTTCTGAGAAAACCACTGTTGTCGTAGATTGTGATAGTTCCGAAAACATTACTCAACGAACTTCGACATACAGAGGGGTTTCAAGGCACAGATGGACGGGTAGATTTGAAGCGAATCTATGGGATCACAGTGGTAAGCTAGAGGGTCGTGTCAGGAAAGGGCGTCAAGTGTATTTGGGTGGATATGACAGTGAAGAAAATGCCGCAAGGGCTCATGATTTGGCAGCATTGAAGTATTGGGGACCAACCGCTACTACAAACTTTCCTGTTTCCGATTATGCCAAGGAAATTGAGGAGATGAAACATGAAGGAAAGCGAGAATATATTACTTCACTGCGAAGGAAAAGCAATGGTTTTTCTAGGGGGACTTCAAAATATAGGGGTGTTACAAGACACCGCCAAAGTGGTAAATGGCAAGCAAGAATTGGTCGAGTCGCTGAAAACAAATATCTATACTTGGGAACATTTGAAACCGAAGAGGAAGCTGCAGAGGCCTATGACATTGCAACCCTAAAATATAAAGGTGCAAATGCTATAACCAATTTTGATTCCAGTAGATATGATATGGAATCGATATCGAAGAATCCTATTCCAATTGATCGAGCATCAAAACGCTTGAAACCTTCGCAACAATCAGCGAAGAAAGCTCCTACGAGTGGGACTGATCAATCTCATTGTACCAATGTGAATAGCAGCATCAATTTTCAGCCAATTGCTTCTACACCGTATAACTCTGCAACACCATATTTTCCATGCAGTCCTTTCCACCATTTTCATCCTCCTACCAATGCAGAAACTGGAATAGTGGAGTCTTCTGAAACTACAACCAGTGCAGGTGCAATACTCACTACAATGCCAACAGCAGCTGAGTCATTTCTTTGGCAAGATCAGTTCTATTGA 1164 0.4158 MDSSQNKMQEMENFAEENPNSFSVYDSSLTSLFFNDELDPKSIDEFLAVSTTVNTFGSELNGSEPNNEVRSIGTTELCDPSKEAAVTVSSEKTTVVVDCDSSENITQRTSTYRGVSRHRWTGRFEANLWDHSGKLEGRVRKGRQVYLGGYDSEENAARAHDLAALKYWGPTATTNFPVSDYAKEIEEMKHEGKREYITSLRRKSNGFSRGTSKYRGVTRHRQSGKWQARIGRVAENKYLYLGTFETEEEAAEAYDIATLKYKGANAITNFDSSRYDMESISKNPIPIDRASKRLKPSQQSAKKAPTSGTDQSHCTNVNSSINFQPIASTPYNSATPYFPCSPFHHFHPPTNAETGIVESSETTTSAGAILTTMPTAAESFLWQDQFY* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2289 387 Gene3D AP2/ERF domain 111 179 IPR036955 GO:0003700|GO:0006355
Psa4g2289 387 Gene3D AP2/ERF domain 212 272 IPR036955 GO:0003700|GO:0006355
Psa4g2289 387 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 47 318 - -
Psa4g2289 387 SUPERFAMILY DNA-binding domain 110 179 IPR016177 GO:0003677
Psa4g2289 387 CDD AP2 212 273 IPR001471 GO:0003700|GO:0006355
Psa4g2289 387 ProSiteProfiles AP2/ERF domain profile. 213 271 IPR001471 GO:0003700|GO:0006355
Psa4g2289 387 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 47 318 - -
Psa4g2289 387 MobiDBLite consensus disorder prediction 293 314 - -
Psa4g2289 387 SMART rav1_2 213 277 IPR001471 GO:0003700|GO:0006355
Psa4g2289 387 SMART rav1_2 111 183 IPR001471 GO:0003700|GO:0006355
Psa4g2289 387 CDD AP2 110 179 IPR001471 GO:0003700|GO:0006355
Psa4g2289 387 ProSiteProfiles AP2/ERF domain profile. 111 177 IPR001471 GO:0003700|GO:0006355
Psa4g2289 387 MobiDBLite consensus disorder prediction 283 314 - -
Psa4g2289 387 SUPERFAMILY DNA-binding domain 212 272 IPR016177 GO:0003677
Psa4g2289 387 Pfam AP2 domain 212 263 IPR001471 GO:0003700|GO:0006355
Psa4g2289 387 Pfam AP2 domain 112 169 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2289 Psa-Chr4 186342751 186345077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2289 103 336 AP2-EREBP Transcription Factor Family AT5G57390 59.916 2.69e-96 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Psa4g2289 AP2 1.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2289 K09285 - gmx:100777168 353.984