Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2278 ATGATGGATTCTTGCGTCCCACCTGGATTTCGGTTTCATCCGACCGACGGAGAGCTGGTTGGTTATTATCTTAGAAAGAAAGTTGCTTCTCACACGATTGATCTTGATGTTATCAAAGAAATCGATCTATATCGTATCGAACCATGGGATCTCCAAGATATGTGTAGAATTGGGAATGAGGAGCAGCATGAATGGTATTTTTTTAGTCACAAAGATAAGAAGTATCCGACGGGGACGAGGACGAACCGAGCTACGATGGCGGGGTTCTGGAAAGCAACAGGAAGAGATAAGTCAGTGTATGAACGAACAAAGCTTATTGGAATGAGGAAGACACTTGTTTTCTACAAAGGAAGAGCTCCGAATGGACAGAAAACTGATTGGATCATGCATGAGTATAGGCTTGAAACTGTAGAAAATGCACCTCCACAGGAGGAAGGTTGGGTTGTGTGCAAAGCATTCAAGAAGAAAACCAATGTCCAAACAAAGACTAATGAAAGATGGGAACCAAACAACTTATATGATATGGAACAAACAAGTGGCATCATCTCAATGCAACCTCAGAGACTTTCATCTCAAACTTTCATGTACAAGCAAGATATAGAAGAAGATAACTTAATCTTCATGCATTCACAACAACTGCTACCTCTTCCTCAGTTAGAAAGTCTCTCTTTGCCATTAGCAAAGAGACAAATTTCAATGTCAATAGAATCAGAAAATAATGTTAACAATAATGATGTTCAAATTGGATTATTATCCAGCATCAACAAAACTGAGAAAGTGACTGATTGGAGGGATCTTGACAAGTTTGTAGCTTCTCAGTTGAGTCAAGAAGATCATAGACATGAAACAAGCTCAGACATGTCATTGTTGCTACTTCAAAGTAGTAGTGATGAAGAGATAAAGTTAAGCTCATTTTTAAGTACAAGCTTAGATTGTGACATTGGGATATGTGTATTTGAAAATTAA 966 0.383 MMDSCVPPGFRFHPTDGELVGYYLRKKVASHTIDLDVIKEIDLYRIEPWDLQDMCRIGNEEQHEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKSVYERTKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLETVENAPPQEEGWVVCKAFKKKTNVQTKTNERWEPNNLYDMEQTSGIISMQPQRLSSQTFMYKQDIEEDNLIFMHSQQLLPLPQLESLSLPLAKRQISMSIESENNVNNNDVQIGLLSSINKTEKVTDWRDLDKFVASQLSQEDHRHETSSDMSLLLLQSSSDEEIKLSSFLSTSLDCDIGICVFEN* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2278 321 PANTHER NAC DOMAIN-CONTAINING PROTEIN 76 4 289 - -
Psa4g2278 321 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Psa4g2278 321 SUPERFAMILY NAC domain 4 155 IPR036093 GO:0003677|GO:0006355
Psa4g2278 321 Pfam No apical meristem (NAM) protein 7 134 IPR003441 GO:0003677|GO:0006355
Psa4g2278 321 ProSiteProfiles NAC domain profile. 6 155 IPR003441 GO:0003677|GO:0006355
Psa4g2278 321 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2278 Psa-Chr4 185311945 185314574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2278 2 321 NAC Transcription Factor Family AT2G18060 57.182 9.36e-134 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa4g2278 NAM 4.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2278 - - aprc:113869508 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3530 2 386042670 386045611 Psa4g2278 4 185311945 185314574 PCT