Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2263 ATGCTTCACCAAACTCACCTTCCACTTTCACCCTTCAATTCTTTCACTTCACACTCCTCTCTACCTTCTCTTCATACCTCTCAGGCTGAAACAAAAATGGAGTGTGTGAATGCAGAAACAGCTTTCTCGGATTTTCATGTCCAAACCATAGCTCCTGTTGATGATTTCTCTGTCGATGATTTCCTCAACTTTTCCAATGAAGAAGAACAAGAACAAGACACTCTCCAACAACCTCAACAAGACATTCTAGATGAAAAGCAACAAGAAAACCATTTCCAAGACAATACCCACAATCATAATGAAATTTCAAACCCCATAATCAATAACCACTTTGAATCATTACCAACTACCGAACTCACTGTTCCGGTAGAAGAAGCTGCTAACTTAGAATGGTTATCTTATTTCGTTGAAGATTCCTTCTCACAATTCTCCATGACAGAGAATCATCATCTTCTTCAACCAAAAGCTCCTGAACCAAAACCCAATATTTCAACGCCGTGTTTCAAAACTCCGGTGCCAGGGAAAGCTAGAAGCAAGAGAACAAGAACCGGAGTTCGTGTATGGCCAGTTTCACTAGTCGATTCATCCTCAACTTCAAGCTCCACTGCTCTTTCTTCCTCTTCCTCGCACCTCGAGGAATGTTCGAAGCCGCCGGAGAAAAAACCGAAGAGGAGGATGGGTTCGCTGGACGGCGGCGAAGGGAGAGGTGTTCTGCGGCGGTGCAGTCATTGCGGTGTTCAGAAAACTCCCCAGTGGCGAACCGGACCGGCTGGACCGAAAACGCTCTGTAACGCTTGTGGGGTTCGTTACAAGTCGGGTCGGTTATTACCCGAATATAGACCCGCTTGTAGCCCCACTTTTTCGAGGGAAATGCATTCTAATCATCACCGGAAGGTTCTGGAGATGCGGCGGAAGAAGGAGGTTGTTCCCGGTTCGCCACTTCACCCGGCTGCTCCCGGTTTTTGA 966 0.4648 MLHQTHLPLSPFNSFTSHSSLPSLHTSQAETKMECVNAETAFSDFHVQTIAPVDDFSVDDFLNFSNEEEQEQDTLQQPQQDILDEKQQENHFQDNTHNHNEISNPIINNHFESLPTTELTVPVEEAANLEWLSYFVEDSFSQFSMTENHHLLQPKAPEPKPNISTPCFKTPVPGKARSKRTRTGVRVWPVSLVDSSSTSSSTALSSSSSHLEECSKPPEKKPKRRMGSLDGGEGRGVLRRCSHCGVQKTPQWRTGPAGPKTLCNACGVRYKSGRLLPEYRPACSPTFSREMHSNHHRKVLEMRRKKEVVPGSPLHPAAPGF* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2263 321 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 236 297 - -
Psa4g2263 321 MobiDBLite consensus disorder prediction 198 212 - -
Psa4g2263 321 CDD ZnF_GATA 240 296 IPR000679 GO:0006355|GO:0043565
Psa4g2263 321 PANTHER GATA TRANSCRIPTION FACTOR 29 308 - -
Psa4g2263 321 MobiDBLite consensus disorder prediction 198 234 - -
Psa4g2263 321 MobiDBLite consensus disorder prediction 155 183 - -
Psa4g2263 321 ProSitePatterns GATA-type zinc finger domain. 241 266 IPR000679 GO:0006355|GO:0043565
Psa4g2263 321 Gene3D - 237 308 IPR013088 GO:0006355|GO:0008270
Psa4g2263 321 PIRSF Txn_fac_GATA_plant 26 313 IPR016679 GO:0003677|GO:0005634|GO:0045893
Psa4g2263 321 Pfam GATA zinc finger 241 275 IPR000679 GO:0006355|GO:0043565
Psa4g2263 321 ProSiteProfiles GATA-type zinc finger domain profile. 235 271 IPR000679 GO:0006355|GO:0043565
Psa4g2263 321 MobiDBLite consensus disorder prediction 213 230 - -
Psa4g2263 321 SMART GATA_3 235 289 IPR000679 GO:0006355|GO:0043565
Psa4g2263 321 PANTHER GATA TRANSCRIPTION FACTOR 29 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2263 Psa-Chr4 184215583 184217608 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2263 27 307 C2C2-Gata Transcription Factor Family AT5G66320 43.949 1.07e-65 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Psa4g2263 GATA 1.2e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2263 - - cam:101512459 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3552 2 387338751 387339890 Psa4g2263 4 184215583 184217608 ECH
Psa4g2263 4 184215583 184217608 Psa4g2263 4 184215583 184217608 ECH
Psa2g3552 2 387338751 387339890 Psa4g2263 4 184215583 184217608 PCT