Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2252 ATGGCTGGTTTGTTCTCACTAGGAGGAGGAAGAGGAAACAACCAAGAAGGTGGAGCATCACAACAACAACAACATCAACCAGGTCAGATTCCTCCTCAAGAGACTCTTTTCTGGTACAACAAAAACGATGATGTTTCATCTTATAGAGGAAATTTAGAACTATGGAACCAGCACCAACACCAGCACCAGCACCAACAACACCAACAGCATCATCATCATCAACAACAACAACATGATCAACAAGGTGAAGAAGGTGTTATAGCAGCACATGCTGCACGGCCGTTTTTCTCGCGAGATCTGTATGGATTAGGAGTGGGACCGAGTAGGGTTTCGTCGGATGATCAACAACATCAGACGTTGAATATGGGGATGAGGTCTTCTTCATCCGGTGGTGGTGGTGGTGGTGGTGAAGGGATAAGCTGTCAAGATTGTGGTAACCAAGCCAAGAAAGATTGTCCTCACATGAGATGTAGAACTTGTTGCAAGAGTCGTGGATTTCAGTGCCAAACTCATGTAAAAAGCACTTGGGTCCCTGCTTCAAGACGCCGGGAAAGACAACAGCAGTTATCATCTTCTTCATCTTTACAACGAGACATTTCTAAACGCCCAAGAGACTCCAACGCTCTTGTTTCCACTCGTAATTTTCCATCAGGGTTAGAGGAAGCAAATTTTCCTGCTATAGTAAGTTCACCGGCTGAGTTCAGGTGTGTAAGGGTTAGCTCAATTGACGAAGCAGATGAAAGGTTTGCATATCAAACGGCTGTCAACATTGGAGGACATTTGTTCAAAGGAATTCTCTATGATTTTGGTCCTGAAAACACTATCAACAACAATAACAATACTTATAATAATACTAATTACATGATTGGCGAAACCTCCGGGGGCGCTCTTCCCGTTGCTCAACCGTTGAACCTGATCGCCGACTCTGATACCACTGTTGTTTCTTCCGGAGCACTTGTTGATCCTTCTTCCTTGTATTCGGCTCCTATGAACGCCTTCATGGCGGCGAGTGGTACGCAATTCTTCTCTCGTCCAAGATCTTGA 1044 0.4483 MAGLFSLGGGRGNNQEGGASQQQQHQPGQIPPQETLFWYNKNDDVSSYRGNLELWNQHQHQHQHQQHQQHHHHQQQQHDQQGEEGVIAAHAARPFFSRDLYGLGVGPSRVSSDDQQHQTLNMGMRSSSSGGGGGGGEGISCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPASRRRERQQQLSSSSSLQRDISKRPRDSNALVSTRNFPSGLEEANFPAIVSSPAEFRCVRVSSIDEADERFAYQTAVNIGGHLFKGILYDFGPENTINNNNNTYNNTNYMIGETSGGALPVAQPLNLIADSDTTVVSSGALVDPSSLYSAPMNAFMAASGTQFFSRPRS* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2252 347 MobiDBLite consensus disorder prediction 177 197 - -
Psa4g2252 347 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 345 IPR007818 GO:0003700|GO:0006355
Psa4g2252 347 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 140 182 IPR006510 -
Psa4g2252 347 Pfam Domain of unknown function (DUF702) 138 272 - -
Psa4g2252 347 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 345 - -
Psa4g2252 347 MobiDBLite consensus disorder prediction 177 209 - -
Psa4g2252 347 MobiDBLite consensus disorder prediction 57 84 - -
Psa4g2252 347 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 224 271 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2252 Psa-Chr4 181099769 181103111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2252 1 347 C2H2 Transcription Factor Family AT3G51060 42.356 1.92e-72 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Psa4g2252 DUF702 3e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2252 - - lja:Lj0g3v0059359.1 329.717