Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2240 ATGAGCGCCAATTGTACTTGCAAAAGTTACAACGAAGATGACTCTACTTATGAGACTGAGAAGGCTTATCTCAAACAACCCAAAGTGTTTTTATGCTCGAAGAAATCTGGTAAGGGGAAGAGGCCCGACAAAGGTGGAAATCGCTTCTGGAAATCTGTTGGTCTTGGATTCAAGACCCCCAAAGAAGCCATCGAAGGAACCTTTATTGACAAGAAGTGTCCATTCACTGGCAATGTTTCCATTCGGGGTCGTATCATAGCCGGAACCTGTCACAGTGCCAAAATGAATCAGACTATTATTGTCAGGAGGAATTATCTTCACTTCATTAAGAAATATCAGAGGTATGAGAAGAGGCATTCCAACATTCCAGCTCATGTGTCACCTGCCTTCCGTGTTAAGGAAGGTGATCATGTCATTATTGGTCAATGCAGGCCACTCTCCAAGACAGTGAGGTTCAATGTGTTGAAAGTCATCCCAGCTGGATCATCCAGTGGTGCAAAGAAGGCGTTTTCTGGCATATGA 522 0.4387 MSANCTCKSYNEDDSTYETEKAYLKQPKVFLCSKKSGKGKRPDKGGNRFWKSVGLGFKTPKEAIEGTFIDKKCPFTGNVSIRGRIIAGTCHSAKMNQTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPAFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFSGI* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2240 173 SUPERFAMILY Nucleic acid-binding proteins 82 161 IPR012340 -
Psa4g2240 173 ProSitePatterns Ribosomal protein S17 signature. 135 147 IPR019979 GO:0003735|GO:0005840|GO:0006412
Psa4g2240 173 Pfam Ribosomal_S17 N-terminal 19 86 IPR032440 -
Psa4g2240 173 TIGRFAM uS17_arch: ribosomal protein uS17 68 157 IPR028333 -
Psa4g2240 173 PANTHER BNAA06G38660D PROTEIN 20 172 - -
Psa4g2240 173 Pfam Ribosomal protein S17 88 156 IPR000266 GO:0003735|GO:0005840|GO:0006412
Psa4g2240 173 PRINTS Ribosomal protein S17 family signature 102 125 IPR000266 GO:0003735|GO:0005840|GO:0006412
Psa4g2240 173 PRINTS Ribosomal protein S17 family signature 135 145 IPR000266 GO:0003735|GO:0005840|GO:0006412
Psa4g2240 173 PRINTS Ribosomal protein S17 family signature 145 152 IPR000266 GO:0003735|GO:0005840|GO:0006412
Psa4g2240 173 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 20 172 IPR000266 GO:0003735|GO:0005840|GO:0006412
Psa4g2240 173 Gene3D - 2 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2240 Psa-Chr4 180033597 180035922 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2240 18 173 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 84.615 4.53e-91 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2240 K02949 - gmx:100784140 280.796