Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2230 ATGTCCTCCCACATCTCATTTGTTCACCAGTTCAGGCAGTTGGCTTATGCTGTGTCGAATTCGGTCAAATCTCTAGTGCAAACACCTGAAATAGCACCAGTCCTTGCTGAAAGTAGTTATACAGACCGAAATGTCATAATAGCACCACCACAATCTCCTATTGCTTATGAGATACCCACACCAGCAGTAGTTATACAGACCGAAATGTCAGATAGCAAAGTTCATAATGAGATTCAGAATCATATTGTTGATTCAAATAATCAGCAACAATCAACCTCAATGGAGTTGCACGACATTGCCGGTTCTATGACAAACAACCAAACAGAAGTTGTGAATTCTGACTCTACAGCGATAGAAGTATATACAGAACCACTTGCATCTCTACTGCCAGATGCAGGGGGGTCAAGTTTTGAGCCTGTTGAGAGCCAACATCCTGCTGAGGAATCAGATATTGAACTACTGCCCGCCATGAGAATGTTGAAGAAAAGATTGAAAGGCATGATAGAAATCAAACTGCCACCTCAAGGGAAATTGTGGTACAGTTCAATGTTGATATCGCTGATATGGGATCCAATCTATTTGGAAATTGAGCCAGCATTGAAAAATAGCATTGTCGTTTCAACAGTACTGATGACTGTTAGAATTGCAATTGTTAATTGGCTTATCATTGGATTTGTCACTGAATACTATACCGGCGATGCATACAGCCCTGTGCAAGATGTTGCTGATTCCTGCAGGACTGTGACAATGTCGGAGTTTGTTGCCGAGATGATGAAAGAATCACAAAGTAAGGACAATGTTACCATTCGATGGGATATTGGTCTCAATAAGAAGCGAGTTGCATATTTTGTATTTCCAAAGGGAGATAATGAGTTACGGCTCGTACCTGGTGATGAGCTATGTTTGCGTTATCCCGGTAATGCTGCACATCCTTCTTGGCAGTCAGTGGGTCATGTGATTAAGCTAACTGCACAAGAGGAGGTTGCGTTGGAACTTCGGGCTAGCCAGGGGGTTCCAGTTGATGTCAACCATGGTTTTAGTGTTAATTTTGTCTGGAAAAGTACCAACGTTGATAGGATGCAAGGAGCTATGAAAACTTTTGTTGTTGATGAGACAAGTGTCAGCAGGGCTTCCAGAACTGAATGCATCACAAGTGTTTGCTGTCAAGAGTGTTTCTTCAGAGGCCTATTTAGTTTGATTCAAAGACCACCTGGAACTGGTAGAACTGTAACATCAGCAGCACTTGTATATCACATGGCCAAACAAGGCCAGGGACAGGTTCTGGTTTGTGCACCTAGTAATGTAGTCGTGGGCCAGTTGGCTGAAAAAATAAGTGCTACTAGATTTAAGGTTGTGAGGCTATGTGCAAAGTCAAGGGAAGCTGTGAGTTCACCTGTTGAGCATTTAACTCTTCACCATCAGGTTCGACGTCTTGACACGTCTGATAAGAGTGAACTTCATAAGTTACAACAGCTGAAGGATGAACAAGGAGAACTTTCTAGCAGTGATTGTCTCATTACACTTTAA 1527 0.4231 MSSHISFVHQFRQLAYAVSNSVKSLVQTPEIAPVLAESSYTDRNVIIAPPQSPIAYEIPTPAVVIQTEMSDSKVHNEIQNHIVDSNNQQQSTSMELHDIAGSMTNNQTEVVNSDSTAIEVYTEPLASLLPDAGGSSFEPVESQHPAEESDIELLPAMRMLKKRLKGMIEIKLPPQGKLWYSSMLISLIWDPIYLEIEPALKNSIVVSTVLMTVRIAIVNWLIIGFVTEYYTGDAYSPVQDVADSCRTVTMSEFVAEMMKESQSKDNVTIRWDIGLNKKRVAYFVFPKGDNELRLVPGDELCLRYPGNAAHPSWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGFSVNFVWKSTNVDRMQGAMKTFVVDETSVSRASRTECITSVCCQECFFRGLFSLIQRPPGTGRTVTSAALVYHMAKQGQGQVLVCAPSNVVVGQLAEKISATRFKVVRLCAKSREAVSSPVEHLTLHHQVRRLDTSDKSELHKLQQLKDEQGELSSSDCLITL* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2230 508 Gene3D - 352 508 IPR027417 -
Psa4g2230 508 PANTHER DNA2/NAM7 HELICASE FAMILY 395 503 IPR045055 -
Psa4g2230 508 PANTHER DNA2/NAM7 HELICASE FAMILY 256 375 IPR045055 -
Psa4g2230 508 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS 1-LIKE PROTEIN 395 503 - -
Psa4g2230 508 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS 1-LIKE PROTEIN 256 375 - -
Psa4g2230 508 Pfam AAA domain 393 498 IPR041677 GO:0004386
Psa4g2230 508 Gene3D - 263 351 - -
Psa4g2230 508 CDD 1B_UPF1-like 263 350 IPR040812 -
Psa4g2230 508 Pfam RNA helicase UPF1, 1B domain 262 351 IPR040812 -
Psa4g2230 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 279 477 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2230 Psa-Chr4 179834271 179836697 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2230 195 247 Primary Pumps ATPases AT1G15690 50.575 9.94e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2230 K14326 - gmx:100795594 391.734