Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2221 ATGGTTAGAATGTTAGATATACTGGCACAGTATCTGCCACTTCGAGGATTTCAATTTCAGAGGCTTGATGGGAGTACAAAATCTGAGCTGCGACAACAGGCAATGGAACATTTTAATGCACCAGGCAGTGATGATTTTTGCTTCCTTCTTTCAACGCGAGCAGGTGGTTTGGGTATCAACCTGGCCACAGCAGACACTGTTATAATATTTGATTCAGATTGGAATCCTCAAAATGATCTGCAGGCAATGAGTCGAGCTCATCGAATTGGGCAACAGGAAGTTGTTAACATATATAGATTTGTTACAAGCAAAAGTGTTGAGGAAGATATTTTGGAACGTGCTAAGAAGAAGATGGTTCTCGACCACTTGGTTATTCAAAAACTAAATGCAGAGGGTAAACTGGAAAAGAAAGAAGCCAAAAAAGGAGGAAGCTTTTTTGACAAAAATGAGCTCTCAGCTATTTTGAGATTTGGAGCAGAAGAGCTTTTTAAGGAAGAAAGAAATGACGAGAGAAGTGAAGGTGGACATAGATGA 534 0.3989 MVRMLDILAQYLPLRGFQFQRLDGSTKSELRQQAMEHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGKLEKKEAKKGGSFFDKNELSAILRFGAEELFKEERNDERSEGGHR* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2221 177 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 131 IPR001650 -
Psa4g2221 177 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 165 IPR027417 -
Psa4g2221 177 Pfam Helicase conserved C-terminal domain 9 90 IPR001650 -
Psa4g2221 177 SMART helicmild6 6 90 IPR001650 -
Psa4g2221 177 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1 172 - -
Psa4g2221 177 Coils Coil 120 140 - -
Psa4g2221 177 CDD SF2_C_SNF 1 101 - -
Psa4g2221 177 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 1 172 - -
Psa4g2221 177 Gene3D - 1 176 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2221 Psa-Chr4 179156179 179157173 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2221 3 129 RAD5 or RAD16-like Gene Family AT1G11100 36.170 1.19e-20 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2221 K11367 - gmx:100792398 313.923