Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2199 ATGAGTGAGACGCTGATGCTAATGTCAAAAGATATAACAATAGAAAATTTTTCTGTGTCTGCTCGGGAGGTTGTTGGGATGATAAAACCGCGCTCGAAGCCGTCGTTTTCAGCCAATGCAGAACTTGTTAAAGTTCGACAACAAGTTGCAGATTTTACAGAATGCAGCTCTGGCAAAGAGGGTTGTGATAAAGATGATACTAATGAGGATGAGGATGAGGTGCCGGAGAAAAGCTCGCAGAGCTGTAATGAAAAATTACAACTGATGGGGTCTGATGCTGCTGAACCCTCAGCGTCAAAGATTTTAGCCGAGGTACCACACAAGTGGAGAGACTACAGCGTGGCGTTCCACTTTTCTGAACCTACTGAGCTCACACCTCCACTTCTGCAGGTTATTAATGTGAGCTTCAGCTATCCAAACCGAGAGGATTTCAGACTCTCCGATGTTGATGTTGGCATTGATATGGGGACTCGTGTTGCCATTGTTGGGCCTAATGGAGCTGGAAAATCCACACTGCTAAATCTTCTAGCCGGCGATTTGAATCCAAAGGAAGGCGAAGTTCAAAGGAGTCAGAAGTTGAGAATAGGGAGATACTCCCAACATTTTGTGGACCTGCTGACGATGGACGAAACACCTGTTCAGTATCTCCTTCGCCTCCACCCAGACCAGGAGGGACTTAGTAAGCAAGAGGCTGTCCGTGCAAAACTTGGCAAATTTGGGCTACCTAGTCATAATCATCTTACCCCCATTGTCAAACTATCGGGAGGCCAGAAATCTCGGGTGGTTTTCACGTCGATATCCATGTCAAAACCTCACATTTTATTGTTAGATGAACCGACGAATCATCTGGATATGCAAAGTATTGACGCATTGGCCGATGCGCTGGATGAATTCAATGAACCGACGAATCATCTGGATATGCAAAGTATTGACGCATTGGCCGATGCGCTGGATGAATTCACAGGTGGAGTTATTCTTGTTAGTCACGATTCTAGATTGATATCGCGGGTCTGTGATGATGAACAAAGGAGTCAAATTTGGGTTGTTGAGGATGGCACTGTCAGAATTTTCCCTGAAACATTTGAAGATTACAAGGAAGATTTGCTGAAAGAGATTAAAGCTGAAGTTGATGATTGA 1137 0.4468 MSETLMLMSKDITIENFSVSAREVVGMIKPRSKPSFSANAELVKVRQQVADFTECSSGKEGCDKDDTNEDEDEVPEKSSQSCNEKLQLMGSDAAEPSASKILAEVPHKWRDYSVAFHFSEPTELTPPLLQVINVSFSYPNREDFRLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLNPKEGEVQRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIVKLSGGQKSRVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFNEPTNHLDMQSIDALADALDEFTGGVILVSHDSRLISRVCDDEQRSQIWVVEDGTVRIFPETFEDYKEDLLKEIKAEVDD* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2199 378 MobiDBLite consensus disorder prediction 56 82 - -
Psa4g2199 378 Gene3D - 98 298 IPR027417 -
Psa4g2199 378 Pfam ABC transporter 146 281 IPR003439 GO:0005524
Psa4g2199 378 Gene3D - 299 377 IPR027417 -
Psa4g2199 378 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 103 299 - -
Psa4g2199 378 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 299 378 - -
Psa4g2199 378 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 21 104 - -
Psa4g2199 378 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 129 376 IPR003439 GO:0005524
Psa4g2199 378 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 298 367 IPR027417 -
Psa4g2199 378 CDD ABCF_EF-3 129 353 - -
Psa4g2199 378 SMART AAA_5 155 353 IPR003593 -
Psa4g2199 378 PANTHER BNAA06G39310D PROTEIN 299 378 - -
Psa4g2199 378 PANTHER BNAA06G39310D PROTEIN 21 104 - -
Psa4g2199 378 PANTHER BNAA06G39310D PROTEIN 103 299 - -
Psa4g2199 378 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 299 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2199 Psa-Chr4 177691646 177693418 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2199 128 298 Calmodulin-binding Proteins AT2G36910 30.769 2.33e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2199 K06184 - mnt:21384470 459.529