Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2196 ATGGGGACTCGTGTTGCCATTGTTGGGCCTAATGGAGCTGGAAAATCTACACTGCTAAATCTTCTAGCCGGTGATTTGAATCCAAAGGAAGGCGAAGTTCAAAGGAGTCAGAAGTTGAGAATAGGGAGATACTCACAACATTTTGTGGACCTGCTGACGATGGACGAAACACCTGTTCAGTATCTCCTTCGCCTCCACCCAGACCAGGAGGGACTTAGTAAGCAGGAGACTGTCCGTGCAAAACTTGGCAAATTTGGGCTACCTAGTCATAATCATCTTACCCCCATTGTCAAACTATCGGGAGGGCAGAAATCTCGGGTGGTTTTCACGTCGATATCCATGTCAAAACCTCACATTTTATTGTTAGATGAACCGACGAATCATCTGGATATGCAAAGTATTGACGCATTGGCCGATGCGCTGGATGAATTCAATGAACCGACGAATCATCTGGATATGCAAAGTATTGACGCATTGGCCGATGCGCTGGATGAATTCACAGGTGGAGTTATTCTTGTTAGTCACGATTCTAGATTGATATCGCGGGTCTGTGATGATGAAGAAAGAAGTCAAATTTGGGTTGTTGAGGATGGCACTGTCAGAATTTTCCCTGAAACATTTGAAGATTACAAGGAAGATTTGCTGAAGGAGATTAAAGCTGAAGTTGATGATTGA 675 0.4415 MGTRVAIVGPNGAGKSTLLNLLAGDLNPKEGEVQRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQETVRAKLGKFGLPSHNHLTPIVKLSGGQKSRVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFNEPTNHLDMQSIDALADALDEFTGGVILVSHDSRLISRVCDDEERSQIWVVEDGTVRIFPETFEDYKEDLLKEIKAEVDD* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2196 224 Pfam ABC transporter 2 127 IPR003439 GO:0005524
Psa4g2196 224 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 145 224 - -
Psa4g2196 224 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 145 - -
Psa4g2196 224 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 222 IPR003439 GO:0005524
Psa4g2196 224 Gene3D - 1 145 IPR027417 -
Psa4g2196 224 SMART AAA_5 1 199 IPR003593 -
Psa4g2196 224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 145 IPR027417 -
Psa4g2196 224 PANTHER BNAA06G39310D PROTEIN 145 224 - -
Psa4g2196 224 PANTHER BNAA06G39310D PROTEIN 1 145 - -
Psa4g2196 224 Gene3D - 146 223 IPR027417 -
Psa4g2196 224 CDD ABCF_EF-3 1 199 - -
Psa4g2196 224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 213 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2196 Psa-Chr4 177633548 177635729 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2196 2 144 Calmodulin-binding Proteins AT2G36910 29.518 1.95e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2196 K06184 - lja:Lj6g3v0521710.1 366.311