Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2191 ATGGGAACTGATAGTTGTGAAGTGGTAGAGCCATTACCAGATCCCCGCTCTTTTAAGGTACATCGGAGATTATGCTCAGAACTCAGGAAATTAGTTTCTAGAGTCCTAAGGATATTTCCGCAGATAGAGGAAACGCGCCCTCGGTCCTCATCAGGAATATCAGCTCTGTGTTTGCTAACTAGTACACTTGATAAAGCTAAACAGCTTCTGCAAAATTGCTCTGAATCTAGTATACTCTACCTGGCAATAACAGGGGAGTCAATACTGTCAAAATGCCAAAAAGCAAGAAAGTCATTAGAGAAAAGCTTAGTCCAGATTCAGGATATAGTTCCTGTTATGTTGGCTGTAGAGATTTCTCGAATAACTGATGATCTTAGGTGTGTGACATTTGCCCTGGATTCTGTTGATGAAGAGGCTGGAAGGGTTACGAGAGAGTTGCTCCAGCAAGGTCCTTCAACCTCAGATAACGATTCAAAGGAAAATTCAGACATTAAATCTCTCCAGTTTGTGGCGGCGAGACTTAATATTACATCCGCAACAACCATCATAATAGAGATTAGATCTATTAGGAAGTTATTACATAAACTTGGACCAAAAGAGGAAAATAAAAAGATGATCTTGAAAAATCTTTTGTATCTTCTGATAACTCATAGGAAGTCAATCATAGGAGAACAAATGGAGGTCTATTCTCGTCCTGAAGAACCAGCAACAACTGAGAACTCTGGTCATGATTCTTTATCCTCCAATCATGTGAAGTCAGATCCGTATTTGAACCATGATCATTATGGAACTCCTGCCAGCGAGTCAAGTAGAGTTGCACCCCCGGAGGAATACACATGTCCTATATCTTTAAGGTTGATTTATGATCCTGTTGTCATTGCTTCAGGGGAAACATACGAAAGGATGTGGATACAGAAATGGTTTGATGAGGGTAATGTTATATGCCCGAAAACGAAAAAGGAATTGCTGCATATGTCGTTGACTCCCAACGTTGCTTTAAAGGAGTTAATATCAAAATGGTGCAAAGCTAATGGAGTCTCCATTCCTAACCCAAGCAGACGAGTAGAAGACATTCGCTCGTGGGAAGCTTCCGTCACTTCCATTAGGAGTTTTGGAAGTTCCATGAATGGCTTGAATTTGGCAATGGATATTAGTAACATGTCACTTGGATCGTTAGATAACAGTTATAATTCAGATTCCTCACTTGTGAAGGTTAGTCATGGCTTAAATTCAATGTTGGTCAAGACTAGAGGTGGGTCTCGCGACCAGAAATCTCATTCACAGATACATGACACATATCTGACGCCCTTGTCTAAACTTCACGAGCGTCAATGGGATTTGCAAAGCCAAGTCGTCGAAGATATGAAAATAAATTTCAAATGCAATTACCAAGCGTTTTGCTCTACGTTTTCAGCTGAGAATTTTATCGACCCCCTTGTGAGATTTCTGAAAATTGCATATGATAAGCATGACACAAAAGCTTTGAGAAGTGGAAGTCAGTTACTGTTGGAATTTACAAAATACTGCAGAAATGGTGTGGCAAACTTAAGTGAAGATACTTGCAGTGTGTTGGCAAGTCTCCTAGAGTCAGAAGTGATTGGAGAAGCTCTTGCCATTCTGGAAGTTTTGTCAAACCATTGGTCTGATAAAGCTAACATTGCAGCTTCCAGTGCACTGACTTATGTTTCAAAGATCCTTGATTCTGGTAACAAAGAGTACCAGGGGAAAGCTATTAGAATACTGTGCAATTTTTCTTCCAGTACCTCACTTTGTTCTTACATGGTGTCTCTTGGGTGCATCCCAAAACTACTACCATTTTTTGAAGACAAGTTCCTCTCAAGAGACTGTATATGTATACTGAAAAACCTTTTTGATACTGAAGATGGTAGGGTTTCTGTTGTTGAAACAAAGGGATGCATGTCATGTGTTGTTGAAATACTTGGGTCCGGCACTGAAGAGGAAAAGGAACCGGCACTGGCTATTGTACTCTCTCTGTGCTCTCAACGTTTGGATTACTGTGAGTTGGTTATGTACGAGGGTATCATACCATATCTTGTAAATATCTCCAATGAGGGAAACGATAGCACAAAGGCGAAGGCATTGGAACTACTCCGACTTTTGAGGGATGTCGAGTACGAAGATTGCTTTGAGCCAAATCCCAACAACTCTCGAGATCATAACGAAATCCTTGAAGAAAAGAAATCATCAAAGAAGCCCACATTTTTTAAGAAACTGTCACAGATGGGAAAATCAAGTTCAGTTGCATCAAAAAACAAGAGATGA 2283 0.4025 MGTDSCEVVEPLPDPRSFKVHRRLCSELRKLVSRVLRIFPQIEETRPRSSSGISALCLLTSTLDKAKQLLQNCSESSILYLAITGESILSKCQKARKSLEKSLVQIQDIVPVMLAVEISRITDDLRCVTFALDSVDEEAGRVTRELLQQGPSTSDNDSKENSDIKSLQFVAARLNITSATTIIIEIRSIRKLLHKLGPKEENKKMILKNLLYLLITHRKSIIGEQMEVYSRPEEPATTENSGHDSLSSNHVKSDPYLNHDHYGTPASESSRVAPPEEYTCPISLRLIYDPVVIASGETYERMWIQKWFDEGNVICPKTKKELLHMSLTPNVALKELISKWCKANGVSIPNPSRRVEDIRSWEASVTSIRSFGSSMNGLNLAMDISNMSLGSLDNSYNSDSSLVKVSHGLNSMLVKTRGGSRDQKSHSQIHDTYLTPLSKLHERQWDLQSQVVEDMKINFKCNYQAFCSTFSAENFIDPLVRFLKIAYDKHDTKALRSGSQLLLEFTKYCRNGVANLSEDTCSVLASLLESEVIGEALAILEVLSNHWSDKANIAASSALTYVSKILDSGNKEYQGKAIRILCNFSSSTSLCSYMVSLGCIPKLLPFFEDKFLSRDCICILKNLFDTEDGRVSVVETKGCMSCVVEILGSGTEEEKEPALAIVLSLCSQRLDYCELVMYEGIIPYLVNISNEGNDSTKAKALELLRLLRDVEYEDCFEPNPNNSRDHNEILEEKKSSKKPTFFKKLSQMGKSSSVASKNKR* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2191 760 SUPERFAMILY ARM repeat 464 707 IPR016024 -
Psa4g2191 760 SUPERFAMILY RING/U-box 264 350 - -
Psa4g2191 760 MobiDBLite consensus disorder prediction 741 760 - -
Psa4g2191 760 Gene3D - 16 108 IPR036537 GO:0007166
Psa4g2191 760 MobiDBLite consensus disorder prediction 230 249 - -
Psa4g2191 760 CDD RING-Ubox_PUB 280 320 IPR045210 -
Psa4g2191 760 SMART Ubox_2 277 340 IPR003613 GO:0004842|GO:0016567
Psa4g2191 760 MobiDBLite consensus disorder prediction 718 760 - -
Psa4g2191 760 Gene3D - 610 713 IPR011989 -
Psa4g2191 760 Gene3D - 457 609 IPR011989 -
Psa4g2191 760 Pfam U-box domain 275 344 IPR003613 GO:0004842|GO:0016567
Psa4g2191 760 ProSiteProfiles U-box domain profile. 273 347 IPR003613 GO:0004842|GO:0016567
Psa4g2191 760 MobiDBLite consensus disorder prediction 234 249 - -
Psa4g2191 760 PANTHER U BOX DOMAIN-CONTAINING 2 747 - -
Psa4g2191 760 MobiDBLite consensus disorder prediction 718 739 - -
Psa4g2191 760 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 348 IPR013083 -
Psa4g2191 760 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 747 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2191 Psa-Chr4 177323471 177327644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2191 15 711 U-box Gene Family AT4G36550 38.842 5.87e-136 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2191 - - gmx:100798951 992.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2191 4 177323471 177327644 Psa4g2191 4 177323471 177327644 ECH
Psa2g3609 2 390359999 390363855 Psa4g2191 4 177323471 177327644 ECH
Psa2g3609 2 390359999 390363855 Psa4g2191 4 177323471 177327644 PCT