Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2172 ATGATGCATCATTGTTGCAGTAGCTCTCAGCAAGGTCACATAATGGGAGGAGGAGGAACATGCACATGCGGTATGTTTCATCCACAAACCAACTCCAACTACTCCATGCTTTTCTCTAACTATCAAAACCATGATCATTACGATCATTACGACTCATACTCCTACACTTCTCCATCTTCTTCTGTTGACTGTACACTCTCCCTTGCCACCCCTTCCACACGTTTATCTGAAGACCAAGAGAAACGAAACCGTCGCTCTTCTCTTACCAACTTCTGGAACAATAATACTAACCATTCAAATTCAAACTCAAACTCAAAACACAATTCTCAATCTCAAAGCAAATCAAACCGAGGAAACAATATTGGTAATAACTCCAACAATGATTCTCTTCTCGCCCGTCGATGTGCTAGCTGTGACACCACTTCTACACCTCTTTGGAGAAATGGTCCTCGTGGCCCAAAGTCACTATGCAATGCTTGTGGGATTAGATACAAGAAGGAAGAACGAAGAGCGAATGCTGCCACGTCGGCAGCGACAACCGGCGGTGCAATGGAGACAGGCAGCATCTACAGCAGCAACAACAACAACGGTTCGTGGTACGGACAACCGCAGAGTCAAATGTATGGGAACGAGTTACGGTTCATGGAAGATTCAGATGTAGAATCAGAGAATGGGATTCCTAATTTTCTTTCTTGGAGACTCAACACGAGCCTTGTTCATGATTACACCAGATGA 735 0.4435 MMHHCCSSSQQGHIMGGGGTCTCGMFHPQTNSNYSMLFSNYQNHDHYDHYDSYSYTSPSSSVDCTLSLATPSTRLSEDQEKRNRRSSLTNFWNNNTNHSNSNSNSKHNSQSQSKSNRGNNIGNNSNNDSLLARRCASCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRANAATSAATTGGAMETGSIYSSNNNNGSWYGQPQSQMYGNELRFMEDSDVESENGIPNFLSWRLNTSLVHDYTR* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2172 244 MobiDBLite consensus disorder prediction 86 124 - -
Psa4g2172 244 MobiDBLite consensus disorder prediction 73 124 - -
Psa4g2172 244 ProSitePatterns GATA-type zinc finger domain. 135 160 IPR000679 GO:0006355|GO:0043565
Psa4g2172 244 ProSiteProfiles GATA-type zinc finger domain profile. 129 165 IPR000679 GO:0006355|GO:0043565
Psa4g2172 244 CDD ZnF_GATA 134 166 IPR000679 GO:0006355|GO:0043565
Psa4g2172 244 PANTHER GATA TRANSCRIPTION FACTOR 18 1 241 - -
Psa4g2172 244 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 171 - -
Psa4g2172 244 SMART GATA_3 129 181 IPR000679 GO:0006355|GO:0043565
Psa4g2172 244 Gene3D - 131 186 IPR013088 GO:0006355|GO:0008270
Psa4g2172 244 Pfam GATA zinc finger 135 169 IPR000679 GO:0006355|GO:0043565
Psa4g2172 244 PANTHER GATA TRANSCRIPTION FACTOR 18 1 241 IPR044272 GO:0003700|GO:0009908
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2172 Psa-Chr4 175443132 175444091 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2172 22 244 C2C2-Gata Transcription Factor Family AT3G50870 42.908 5.36e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Psa4g2172 GATA 2e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2172 - - jre:108997534 220.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2172 4 175443132 175444091 Psa4g2172 4 175443132 175444091 ECH
Psa4g2172 4 175443132 175444091 Psa2g3439 2 381701965 381712072 PCT