Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2143 ATGGTTGATTTAGACAATGTTTCTACAGCTTCTGGAGAAGCCAGCATCTCTTCCTCTGGTAACAACAATAACAACAACAATAACCAAACAACTCCTCCAAAACCCACTAAGAAAAAAAGAAACCTCCCCGGAATGCCAGATCCGGAAGCAGAGGTGATTTCTTTATCTCCAACGACTCTGTTAGCTACGAATAGATTTGTGTGTGAAATATGCAACAAAGGTTTTCAGAGGGATCAGAATCTTCAACTTCATAGGAGAGGTCATAATCTGCCATGGAAACTGCGGCAGAGGTCGAGTAAGGAAGTTAGGAAAAGGGTTTATGTTTGTCCTGAACCGACTTGTGTTCATCATGATCCTTCTAGAGCTTTAGGCGATCTAACGGGGATTAAAAAGCACTTTTGTAGAAAACACGAGGAAAATGCGAAATCTCAGACTCAACCGGTTGTGAAAGCTAGTTCAGAGTCTGATTCAAAGGTTTTGACTGGAGATTCATTGCCTCAGCCGCCGCCTCCTTCGTTGCCGGTGGTGACTACCGCCGCTGCAACAACTCCTCAGTCAAATAGTGGTGTGTCCTCTGCTTTGGAGACTCAGAAGCTAGATTTACTAGAAATTCCGCCTCAAATCGTAGAGGAGACACAACCGGTTGTCATTGCTACTACTACTTTAAATGCTACTACTATAAATGCTACTACTACTTTAAATGCGAGTGGTAGTAGCAGCAGTACTAGCTCAACAAGCAATGGCCATCCCGCTACTAGCAGCGGTGTGTTTGCAAGCTTGTTTGCTTCTTCAACGGCTTCAGCTTCTACGAGCCTACAATCTCAAACACCAGCCTTCACTGATTTAATTAGGTCCATGGGATGTCCAGATGCTCGCCCTACTGATTTCTCAACTACTCCATCGGCCGAGGCCATATCCCTTTGCCTCTCGACCAATCACGGATCATCCATTTTCGGAACAGGTGGCCAGGAGTGCCGCCAATATGTGCCGACGCATCAGCCACCGGCTATGTCTGCCACTGCATTACTTCAGAAAGCTGCTCAAATGGGCGCCGCCGCAACAAATGCCTCTTTGCTTCGCGGGCTTGGAATCGTGTCGTCTTCCGCTTCCACTTCAACAGGTCAGCAAGATAGCCTTCATTGGGGTCTGGGACAGGTGGAACAGGAGAGTGCTGGCTTAGTTCACGCGGGACTCGGACTAGGTCTTCCTTGTGACAGTGACTCTGGACTAAAAGAATTGATGTTGGGGACTCCGTCGATGTTCGGTCCTAAGCAAACAACTCTTGATTTTCTAGGATTGGGGATGGCTGCAGGTGGCAGCGCCGGTGGAGGTTTGTCAGCACTTATCACATCAATCGGCGGCAGCAGTGGTTTGGATGTTACTACAGCAGCTGCATCTTTTGGTAATGCAGAGTACTCTGGCAAAGATATTGGAAGGAGCTCATGA 1446 0.4751 MVDLDNVSTASGEASISSSGNNNNNNNNQTTPPKPTKKKRNLPGMPDPEAEVISLSPTTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHEENAKSQTQPVVKASSESDSKVLTGDSLPQPPPPSLPVVTTAAATTPQSNSGVSSALETQKLDLLEIPPQIVEETQPVVIATTTLNATTINATTTLNASGSSSSTSSTSNGHPATSSGVFASLFASSTASASTSLQSQTPAFTDLIRSMGCPDARPTDFSTTPSAEAISLCLSTNHGSSIFGTGGQECRQYVPTHQPPAMSATALLQKAAQMGAAATNASLLRGLGIVSSSASTSTGQQDSLHWGLGQVEQESAGLVHAGLGLGLPCDSDSGLKELMLGTPSMFGPKQTTLDFLGLGMAAGGSAGGGLSALITSIGGSSGLDVTTAAASFGNAEYSGKDIGRSS* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2143 481 SMART c2h2final6 107 137 IPR013087 -
Psa4g2143 481 SMART c2h2final6 66 88 IPR013087 -
Psa4g2143 481 MobiDBLite consensus disorder prediction 138 170 - -
Psa4g2143 481 MobiDBLite consensus disorder prediction 1 42 - -
Psa4g2143 481 SUPERFAMILY beta-beta-alpha zinc fingers 64 89 IPR036236 -
Psa4g2143 481 MobiDBLite consensus disorder prediction 8 36 - -
Psa4g2143 481 Gene3D Classic Zinc Finger 46 112 - -
Psa4g2143 481 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Psa4g2143 481 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Psa4g2143 481 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 6 143 - -
Psa4g2143 481 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 160 481 - -
Psa4g2143 481 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 6 143 - -
Psa4g2143 481 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 160 481 - -
Psa4g2143 481 MobiDBLite consensus disorder prediction 144 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2143 Psa-Chr4 172061798 172064159 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2143 237 481 IDZ Gene Family AT5G66730 48.207 1.46e-39 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa4g2143 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2143 K25869 - gmx:100806404 505.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2143 4 172061798 172064159 Psa4g2143 4 172061798 172064159 ECH