Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2118 ATGGTTTCTTACTTCATTCCATTCCACTCTCTATTTCTTGCACTTTTATTCTTTTCTGCCAAAGGAACAAACTTCTCACGCCCTATGAATTTCTCTCTTTCCTATGACACATATGTTGCATACTTTGCTCGCTTTCCAAACTTTTTAACCCTCACGACCATATCTGATATATTTGACACCACTCCTCAATCCATTGCAAGAACAAGCAACATAAAAGATGAAAATATGAACCTTGTTCCAGGCCAACTTTTGCTAATACCTATAACTTGTGGCTGCAATGGAAATGGAAACTACTCTTTTGCTAATATCTCACACTTGATCAAACAAGGTGAAAGTTACTACTATCTTTCAACCATTTCGTATCAGAATCTCACCAATTGGATAACAGTGGAAGATTCAAATCCCAACCTGAATCCATATTTGTTAACAGTGGGCACCAAAATAGTCATTCCTTTGTTCTGTAGGTGCCCTTCAAAAGAGATAGAGTATTTGATTACTTATGTTTGGCAGCCTAATGACAATCTTACCCTTGTAGCTTCCAAGTTTGGTGCATCACAACATGACATAATCACTGCAAATGCAAACAATTTTGGCCAGAATTTTACAGCTGCAACCAACCTTCCAGTTTTTATCCCAGTGAAAAGCTTACCAGCTATTTCACAATTACACTATTCTTCAAGTGGAAGAAAGAAAAACAATCATTTTCCTATTATCATTTTCATTGGTACGTGTCTAGGATGCACTATTCTGATTTCACTGTCGTTACTAGTTTATGTGTATTGTTTGAGGAAGAGAAAAGCTTGTGAGAGTAAGTGTGCGCCTTCAATGGAGATAACAGATAAATTAATTTCAGAAGTTTCAAACTATGTAAGTAAGCCAAAAGTGTATCAAGTTGGTACGATTATGGAAGCTACAATGAACTTCAACGAACAGTGTAGGATAGGGAAATCAGTGTACAAAGCTAAAATCGACGGTCATGTTTTAGCTGTGAAAAATGTTAAGGAAGAAATCACAGTCACAGAAGAGTTGATGATTCTTCAAAAGGTAAATCATGCAAATCTTGTAAAACTAATTGGCGTCTCTTCAGGTTACGTTGGAAATCACTTCCTTGTATATGAATATGCTGAAAATGGATCACTTTATAACTGGCTGTTCTCTGAATTTTCCACTGCTTCAAGCTCAGAGGCTATCCTCACATGGAATCAGAGGTTAAACATAGCAATTGATGTTGCAATTGGTTTGCAATACATGCACGAACACACAGAACCAAGTATAGTCCACAGAGACATCACATCAAGTAACATCCTTCTTGACTCAAACTTTAAGGCCAAGATATCAAATTTTTCTGTTGCAAGAACTACAAAGAATCCTATGATAACAAAAGTAGATGTTTTCGCTTATGGGGTGGTTCTGTTAGAGTTACTAACAGGAAAGAAGTTTTTGAGCGAAAATAGCGAGGTGGATATGTTATGGAAAGATATCAAGGGTGTGTTTGATATAGAAGAGAAGAGAGAGGAAAGGGTTAGAAGATGGATGGATCCTAAGTTGGGGAGTTTTTTTAATGTTGTTGAAGCTCTTAGTTTGCTCTCTTTGGCAGTGAATTGCATAAAAGAACAATCTTTGTTAAGACCAACTATGGGAGAAGTTGTTCTTAGCCTTTCGCTTCTCACTCAACATTCTCCTACTTTGTTAGAGAGGTCTTGTACTTATGGATCAGATGTTGAGGTTATAACTGGAATGGTTACTTCCATCATAGCTCGTTGA 1764 0.369 MVSYFIPFHSLFLALLFFSAKGTNFSRPMNFSLSYDTYVAYFARFPNFLTLTTISDIFDTTPQSIARTSNIKDENMNLVPGQLLLIPITCGCNGNGNYSFANISHLIKQGESYYYLSTISYQNLTNWITVEDSNPNLNPYLLTVGTKIVIPLFCRCPSKEIEYLITYVWQPNDNLTLVASKFGASQHDIITANANNFGQNFTAATNLPVFIPVKSLPAISQLHYSSSGRKKNNHFPIIIFIGTCLGCTILISLSLLVYVYCLRKRKACESKCAPSMEITDKLISEVSNYVSKPKVYQVGTIMEATMNFNEQCRIGKSVYKAKIDGHVLAVKNVKEEITVTEELMILQKVNHANLVKLIGVSSGYVGNHFLVYEYAENGSLYNWLFSEFSTASSSEAILTWNQRLNIAIDVAIGLQYMHEHTEPSIVHRDITSSNILLDSNFKAKISNFSVARTTKNPMITKVDVFAYGVVLLELLTGKKFLSENSEVDMLWKDIKGVFDIEEKREERVRRWMDPKLGSFFNVVEALSLLSLAVNCIKEQSLLRPTMGEVVLSLSLLTQHSPTLLERSCTYGSDVEVITGMVTSIIAR* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2118 587 PANTHER SERINE/THREONINE RECEPTOR-LIKE KINASE NFP 10 587 - -
Psa4g2118 587 Pfam LysM domain 107 151 IPR018392 -
Psa4g2118 587 Pfam LysM domain 50 87 IPR018392 -
Psa4g2118 587 ProSiteProfiles Protein kinase domain profile. 290 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g2118 587 Gene3D Transferase(Phosphotransferase) domain 1 375 456 - -
Psa4g2118 587 Gene3D Phosphorylase Kinase; domain 1 279 374 - -
Psa4g2118 587 SUPERFAMILY Protein kinase-like (PK-like) 289 554 IPR011009 -
Psa4g2118 587 CDD LysM 103 150 IPR018392 -
Psa4g2118 587 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 10 587 - -
Psa4g2118 587 Gene3D Transferase(Phosphotransferase) domain 1 457 564 - -
Psa4g2118 587 Pfam Protein tyrosine and serine/threonine kinase 328 455 IPR001245 GO:0004672|GO:0006468
Psa4g2118 587 ProSitePatterns Tyrosine protein kinases specific active-site signature. 425 437 IPR008266 GO:0004672|GO:0006468
Psa4g2118 587 ProSiteProfiles LysM domain profile. 165 209 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2118 Psa-Chr4 167834015 167836255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2118 69 556 Receptor kinase-like Gene Family AT3G21630 29.730 7.02e-62 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Psa4g2118 PK_Tyr_Ser-Thr 2.7e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2118 - - vra:106777834 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2118 4 167834015 167836255 Psa4g2118 4 167834015 167836255 ECH