Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2115 ATGGGTTGGCTTACCAAGTTGCTAAAGGGTTCCAACCATAAATATTCGGGACGAACATACGAAGGGAAGTATGGACATGACAGAGATTCGAGTAATCACGATGGTTCTGTGGATGATTTGACTGATATTGAGAGAGAGGAAATTGATCGTGCAATTGCGCTTTCCCTTTCGGAGGAAGATTATAAAGGGAAAAAAGTTGTAGAGGATGACTCTGAATCTGAATCTGAAGATGATGAACTGTGTCCACTTGATGACGAAGAAGAAGACCATGTTGGTGATGTTAAGCAAGACGAAGATGACCATGTTGGTGATGTTAAGCAAGAAGAAGATGACCATATAGCTAAAATTCAACAGGACGAAGACACGAGTCTCGATGAAGTTCAACTTGAGGAAGATGAACAACTTGCGAGGGCTATTCAAGAAAGTTTGAGCATTGGTTCACCTGCTCGATCTCACACCGATTCTATATTTCAACCTTTTACAAACCTCTTTCCACCTGTATACAGAATCTGTGCTGGCTGCAACGCCGAGATTGGCCATGGAAGATTTTTGAGTTGCATGGGAGCTGTTTGGCATCCAGAATGTTTTTGTTGCCATGCTTGCAAACTTCCAATCACTGATTATGAGTATTCCATGTCTGGAAATCGCCCTTACCATAAATTGTGCTATAAGGAGCTGCATCACCCAAGGTGTGATGTTTGCAAGATCTTTATCCCACAAAATTCAGCTGGACTCATTGAGTATAGAGCGCATCCTTTCTGGCTGCAAAAATATTGTCCATCGCACGAGCGTGATGGCACTCCTCGTTGTTGTAGCTGTCAGAGAATGGAGTCAACGGACACAAAATATCTGTTGCTTGATGATGGTCGAAAGCTGTGCCTTGAATGTCTTGATTCGGCTATTATGGATACTCACGAATGCCAACCACTCTATCTTGAAATACAAGAATTTTATGAAGGTTTGCATATGAAAATAGAGCAGCAAATTCCTATGCTTTTGGTTGAGAGACAAGCGCTGAATGAAGCCATGGAAGGGGAAAAGAATGGTCATCACCACTTACCTGAAACTCGAGGACTTTGCTTGTCAGAAGAGCAAACTATTCCCACTATTTTAAGGAGGCCGAGTATAGGAGCAGGTTACCGTGTCATAGATATGATAACCGAGCCTTTTAGGCTGATACGTCGGTGCGAAGTGACAGCGATTCTTGTATTGTATGGCCTTCCTAGGTTACTGACAGGATCAATCCTAGCTCATGAAATGATGCATGCTTGGCTTAGACTTAAAGGTAGTGTTCATCTTTCCCGTGATCGATAA 1314 0.4262 MGWLTKLLKGSNHKYSGRTYEGKYGHDRDSSNHDGSVDDLTDIEREEIDRAIALSLSEEDYKGKKVVEDDSESESEDDELCPLDDEEEDHVGDVKQDEDDHVGDVKQEEDDHIAKIQQDEDTSLDEVQLEEDEQLARAIQESLSIGSPARSHTDSIFQPFTNLFPPVYRICAGCNAEIGHGRFLSCMGAVWHPECFCCHACKLPITDYEYSMSGNRPYHKLCYKELHHPRCDVCKIFIPQNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCQRMESTDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLHMKIEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTIPTILRRPSIGAGYRVIDMITEPFRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGSVHLSRDR* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2115 437 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 198 253 - -
Psa4g2115 437 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 130 149 IPR003903 -
Psa4g2115 437 ProSiteProfiles LIM domain profile. 169 229 IPR001781 -
Psa4g2115 437 SMART uim 130 149 IPR003903 -
Psa4g2115 437 SMART uim 43 62 IPR003903 -
Psa4g2115 437 ProSitePatterns LIM zinc-binding domain signature. 171 205 IPR001781 -
Psa4g2115 437 Pfam LIM domain 171 225 IPR001781 -
Psa4g2115 437 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 166 196 - -
Psa4g2115 437 PANTHER PROTEIN DA1-RELATED 2 98 433 IPR045218 -
Psa4g2115 437 PANTHER PROTEIN DA1-RELATED 2 1 102 IPR045218 -
Psa4g2115 437 Pfam Protein DA1 320 435 IPR022087 -
Psa4g2115 437 CDD LIM_DA1 171 223 - -
Psa4g2115 437 SMART lim_4 170 222 IPR001781 -
Psa4g2115 437 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 102 - -
Psa4g2115 437 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 98 433 - -
Psa4g2115 437 Gene3D Cysteine Rich Protein 168 230 - -
Psa4g2115 437 MobiDBLite consensus disorder prediction 59 101 - -
Psa4g2115 437 MobiDBLite consensus disorder prediction 21 42 - -
Psa4g2115 437 MobiDBLite consensus disorder prediction 71 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2115 Psa-Chr4 167721131 167725810 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa4g2115 DA1-like 3.5e-57 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2115 - - gmx:100806605 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2115 4 167721131 167725810 Psa4g2115 4 167721131 167725810 ECH