Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2112 ATGGGGATAGCAACAACTTTATCACTTCCTTCAGCTTTCTCTAATTCATCAAACACACAAAATTTCTATCCAATCTTAGAAAAGTCTCAAAACTCAACCAATTCTATGTCACAAGATTATCAGCACCAGCATCACCACCACCCGAGCCACCACCAACAAGGAATCTTTGGCTTCTCGAACGGATTCGAGAGATCAAACACTCCGGTGGAAGACAACAGTCCACACCACCACCAACAGCAACAAATTCAAAGAGACAAAGTGAGACTCCAAGGCTTCGACTCACAACAACCACCACTCCAACCACCGCCGTCGCTAATAGACAACATAGAAGAAGAACAAGAAGCTCTCCCGGTTTACGAAACAACCGGAATGTTGTCGGAAATGTTCAATTTCCCTCACGGCGCCTCTCCTGCAGCTGAATTATTAGAACAGCAACAACAAATGGCGTCGACTGCGTCGTTCCGTTCCTCGTCAAGAACACCACCACCACCAACACCACATGGAATAGCCAATTCCAGTGACTGGTACGGAAACAGACAATCGATTTTAACAGATTCGAAAAACCATCTTCATAATAACCGTGACAGTAGCAGCAGCAGCATATTTCATCATCAGAATCATCACATATCAAACATTAATGCTGAGTCAGCAGCAGCCATGCAGCTTTTTCTCATGAATCCACAAACCACCAGATCTCCATCTCCTCCACCACCTCAACCTCATCATCCTTCATCTACAAATTCATCCACTCTCCACATGTTACTTCCCAATCCTTCGACTACTAATCTCCAAGCTTTTAACTCCGGAGCGGGAGGGTCTTTCGGTCAATTCACATGGGGACATGGAAGTACTCAAGAAGGAGGAGCAACAACAAGTCATCACCAACCTGAGATTGGAAGTGTTGTTGAAGGACAAGGTCTTTCATTGTCTTTATCTTCATCCTTACAACAACACCACTCCGACGAATTACGAATGGGCGACGCTGCTGGGTTTCTATATTACAATCAAGGAGGACAAGGACCCAGTCCCGGACCGTCTTACAAGAATCTTCACCATCATCATCATTTACAAGGAGGCGGATTAGGACAAATCAGCCATATTCATCAAGGACATATTGGATTCGGTTCATCATCTTCTTCTTCTTTAGGTGTTGTTAATGTTTTAAGAAATTCAAAGTATGTTAAAGCAGCTCAAGAATTACTTGAAGAATTTTGTAGTGTTGGAAGGGGTCAATTCAAGAAGAATAAATTTAGCAGACAGTTATCAAACCCTAATTCAAATCAAGGTGGTGGTAGTATTAATGGTGGTGCTTCTTCATCATCCTCAAAAGATGTTTCACCTTTATCACCTGCTGATAGGATTGAGCATCAGAGAAGAAAGGTCAAACTTCTAACCATGCTTGACGAGGTGGATAGAAGATACAGTCACTACTGTGAACAAATGCAAATGGTGGTGAACTCATTTGATTTAGTGATGGGATTTGGTGCTGCAGTTCCATACACTGCGCTAGCTCAGAAGGCAATGTCGAGGCATTTTAGGTGCTTAAAAGATGCAATAACAGCACAGTTGAAGCATAGCTGTGAGTTATTGGGAGAGAAAGATGGTGTGGGGTCATCTGGTTTGACAAAAGGAGAGACGCCGAGGCTTAAGCTGCTTGAACAAAGCTTGAGACAGCAAAGAGCGTTTCATCAGATGGGGATGATGGAACAGGAAGCTTGGAGACCACAGAGAGGATTGCCTGAACGATCTGTCAACATTTTGAGAGCCTGGCTTTTTGAACATTTTCTTCATCCGTACCCAAGTGATGCAGATAAGCATCTCTTAGCAAGACAGACTGGCCTTTCCAGAAATCAGGTATCAAACTGGTTCATTAATGCAAGGGTTCGATTGTGGAAACCCATGGTAGAAGATATGTACCAACAAGAACTTAAAGAAGCAGAAGGATCCTCAGAAGGTGAAGAAGATAGAGAAAACAAGAATCAAAGCAGTACTAGCAACACCAACACCAACAACAACAACACTAGTGGTCACATATCTACTACAACAACAATTGCACAAACTCCAACAGCATCTCCAACAACAACAACACCACAACCTACAAGCAACAACAATAATAAGAGATCCAATATTATGAATGCCAATATTGAAAACGACCCATCACTTACACCAATAATAAATAGACAAGGCTTCTCGGAAAACCAAGCAATATTGTTACAACAACAATCAACCACCAAAACCACCGTCTCTCAAGTCGCGCCACCTATCTCCGATTCTATGCCCATTGATGACACGTGTCGACATGGCAGCTTTGTTACAGCCGAATATGGGACCACACCTGCTTCTTCTTCTGACAATATTATCAGATTTGGGACCACTACTTCTGGTGACGTGTCTCTCACTTTAGGGCTACGTCACGCCGGAAATTTGCCCGACAAAACTACTTTCTCTCTTACAGACTTTGGAGGCATTTAA 2472 0.4296 MGIATTLSLPSAFSNSSNTQNFYPILEKSQNSTNSMSQDYQHQHHHHPSHHQQGIFGFSNGFERSNTPVEDNSPHHHQQQQIQRDKVRLQGFDSQQPPLQPPPSLIDNIEEEQEALPVYETTGMLSEMFNFPHGASPAAELLEQQQQMASTASFRSSSRTPPPPTPHGIANSSDWYGNRQSILTDSKNHLHNNRDSSSSSIFHHQNHHISNINAESAAAMQLFLMNPQTTRSPSPPPPQPHHPSSTNSSTLHMLLPNPSTTNLQAFNSGAGGSFGQFTWGHGSTQEGGATTSHHQPEIGSVVEGQGLSLSLSSSLQQHHSDELRMGDAAGFLYYNQGGQGPSPGPSYKNLHHHHHLQGGGLGQISHIHQGHIGFGSSSSSSLGVVNVLRNSKYVKAAQELLEEFCSVGRGQFKKNKFSRQLSNPNSNQGGGSINGGASSSSSKDVSPLSPADRIEHQRRKVKLLTMLDEVDRRYSHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAITAQLKHSCELLGEKDGVGSSGLTKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEAEGSSEGEEDRENKNQSSTSNTNTNNNNTSGHISTTTTIAQTPTASPTTTTPQPTSNNNNKRSNIMNANIENDPSLTPIINRQGFSENQAILLQQQSTTKTTVSQVAPPISDSMPIDDTCRHGSFVTAEYGTTPASSSDNIIRFGTTTSGDVSLTLGLRHAGNLPDKTTFSLTDFGGI* 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2112 823 Pfam Associated with HOX 387 520 IPR006563 -
Psa4g2112 823 MobiDBLite consensus disorder prediction 420 452 - -
Psa4g2112 823 Pfam Homeobox KN domain 590 629 IPR008422 GO:0003677|GO:0006355
Psa4g2112 823 MobiDBLite consensus disorder prediction 661 705 - -
Psa4g2112 823 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 105 811 - -
Psa4g2112 823 MobiDBLite consensus disorder prediction 420 447 - -
Psa4g2112 823 MobiDBLite consensus disorder prediction 643 705 - -
Psa4g2112 823 MobiDBLite consensus disorder prediction 31 52 - -
Psa4g2112 823 SMART HOX_1 573 637 IPR001356 GO:0003677
Psa4g2112 823 SUPERFAMILY Homeodomain-like 575 640 IPR009057 -
Psa4g2112 823 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 105 811 - -
Psa4g2112 823 CDD homeodomain 573 634 IPR001356 GO:0003677
Psa4g2112 823 SMART prehox3 382 521 IPR006563 -
Psa4g2112 823 MobiDBLite consensus disorder prediction 643 660 - -
Psa4g2112 823 Gene3D - 576 638 - -
Psa4g2112 823 MobiDBLite consensus disorder prediction 143 175 - -
Psa4g2112 823 ProSiteProfiles 'Homeobox' domain profile. 570 633 IPR001356 GO:0003677
Psa4g2112 823 MobiDBLite consensus disorder prediction 229 248 - -
Psa4g2112 823 MobiDBLite consensus disorder prediction 143 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2112 Psa-Chr4 165754978 165762907 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2112 34 620 Homeobox Transcription Factor Family AT4G36870 51.125 1.64e-145 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Psa4g2112 POX 8.9e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2112 - - mtr:MTR_8g078480 1086.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2112 4 165754978 165762907 Psa4g2112 4 165754978 165762907 ECH
Psa2g3705 2 396701386 396708423 Psa4g2112 4 165754978 165762907 ECH
Psa2g3705 2 396701386 396708423 Psa4g2112 4 165754978 165762907 PCT