Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2103 ATGGTAATGCTTACTTCTTCTGAGGAACCTGGTTGCTCTAAGTCATGTCAATCGATAGCTTATACAAACGTGGATGAGCTTGTCTGTATTGAAAATTGCGAGCACGATATTTTGCATTGGGACGATGAACTCAATGGCAATCGATTACCAGTAATGGATGCGCCTCAGTTACAACAATTATCATTTTCGGAACGGTTAGAGATCGATAAGCCTATGGCTGTCTGGTTCAAGTGGAAAGGAAAGTGGCATGCAGGAATCAAATGTGCAAAAGATGATTTGCCGGTGTCCACTCAGAATGACAAACCAGTTCATGATAATAAGAACAAATATTTCATCATTTTTTCTCCGGATGCAAAGAATTATTCTTGGGTTAAAATGCTTTTTGTTCTATCAATTGATGAATTTCCTCGGCCTATAGCATATGAAACTCATCAAGATGGATTGAAAATTGTACAAGACTTGACTATTGCACGACGGTTTACAATGCAAAACCTTGTCATTGAAATGATCAATATTGTTGAACAAATTCATCCTCGAGCTTTAATAGAAGATGCTCGCGATGTGATAGTTTGGAAGCAATTTGCTATGGAAGCTTCTGATTGTAGAAGCTACTCAGATCTTGGAAGAATGATTCAGCGACTGCAAAAGAGCATAGTGCAGCATTATATAATGGTTGAATGGAAACTGCATTGTTCTAAGTCTTGGGTTCGTCGATGCGAGAAGGCAAAAAATGCAGAAGAAATTGAGCTGCTAAATGAGGAATTGGTTGATTCCATTTTGTGGAATGATGTCTGCAGTCTTTGGTTTGTAGCACCAGAACCAAGATTAGGTGGTGTATGGAAAACTTGGAAGCATGATGTAATGAATTGGTTTTCGAGAAATCCTTTGTTATCTAGCAGAATTGGCTCGCAGACACATGCTTCTAGTTCTAATGGATTGTGCAAAAAAAGCTCTCAAGCTGGTTTCAGAAGGCCTAAACTTCAAATTCGTCGCCCATGCGCACCTTCGATGCATAAAAGTACTGTGGAGGTGCCCGTGGAAACCGAGTTTCCTAGTCAGTTGATGAATGGATTGAGTGATATTGGAGTCGAGGTGCCCGTGGAAACCGAGTTTCCTAGTCAGTTGATGAATGGATTGAGTGATATTGGAGTCGAGGTTGTAGATTCTGATGTTTTGCCCATCACGGCAATAGCATCAAGGCCTATGGATGAGGAAGAAAGTTCGATGGATGAGGAAGAAGCTATTGAATCATTTGTAGAACCTGATAATACTAACAGTCGACAGTGCAAAAAGTTTATCAAAGCCAAGGGAAGGCAATGTAGGAGATTGGCAATTGGTAGTGATAAATATTGTTTTGCTCATTTCTCCAGAAAACCTGAAAAACAAGCTAAAGCGCCTACTCCGATGTGTGGAGGTACAACTGTGGCTGGTACTAAATGCAAGCATCATTCACTTCCTGGCTTTTCATTCTGCAGAAAGCATTTGAGCAATGTTAAGACAAACAATAGTTCAAATTCAAAACGACGTAGAACGAAAAGGAAAGCAAAAGTAAACTACAGTGGTTCGACTTCGAAGAGAAGGGTTTGCGAATACTTAGGCGTGGCACCTCCGAAAAGTCCATTGGATGTTGATCCGGTATCAATCTTTAAGGATGGTTATTACATTGCAAGGAACATCTTTGGAGAAATACTCATGCTTTCTGGTAATGATCACAATGAGGCTCTTCAATGGATAGATTCTCCTCCTAATAGCAATGATGATGATAATGATAATGCAGTTAAGTGTAAGGTATGTTTTGAAGAATTTTCCGATGACGAATCTCTTTGTAACCATTGGATGGATATTCATGAAAGGGAAGCATATTGGTTATTCATGAGTTATGCTTGTGCAATTTGTCTGGATTCCTTCACCAACAAGAAACTATTGGAATCGCATGTTCATAATAGACATCATGTGCAGTTCATTGAACACTGCTTGCTTTTGAAATGTAATGCTTGTGGTGCTAATTTTGGAATTATGGGTGAATTATGGTTGCATGTTAAGTCAGTTCACTCTTCCGAATTCAAGGTAACGAAAGCTCCTAATCCACTAACTTTGACAACTGAAGATGATTCTCCGAATATGACTGAGAACGAAAACGGAGCTTCTTTGGAAGAACCTCAACCTAACAATCTCAATATGTTATCGATTGCTTCCACAACTTCTTGCGAAGTTAATCTCGAAGCTTCGTTGAAGAAGAAATATGGATATTTGCCAGAAAGACTTCGTTTGAAGGCAACAGGAGATTGCAGTGGGAGAGAAACTCTTGAGGATTCGCATCAGGATGAGATTCACCCTGTCATTAGTCCACACTCATTCAAATCGGGTTCGTTGCAAAAGGCGATAGTTTTATGCGATGACATAAGCTTTGGGAAGGAATCAACTCCAGTGATTTGTGTATTGGATCAAGAAATACTCAATTCTCTTTTCGAGAAAGAGCGATACGTAAATCTTCCTACGCCTTGGGAAAGATTTTCCTATGTGACAAAACAGATGCTTGATCGATTTCCTAGTCATAGTCAGGAGGAGAGACTGCAAATGAGGTGTTCTTGCTCCTCTTCTACATGTCGCAAAACCTGTGATCATATATACCTTTTCGATGATTGTTTTGATAACGCAAAAGATATATTCGGGAAACCAATGCGCGGAAAGTTCCCATACAATAAAAACGGTCGACTCATGTTGAAGGAAGGTAATTCCGTGTACGAGTGTAACGATATGTGCAGATGTGGTAAAACCTGTCGGAACAGAATATTGCAGAAGGGAGTTCAAGTTAAATTGGAAGTCTTTAAGACAAAGGAAAAGGGATGGGGAGTAAGGGCTGGCGAGGACATTTTTCGCGGAATGTTCGTGTGCGAGTATATTGGAGAAGTTGTAGAAAAGACGGAGGTAGACAAAAGGCGAGAAAGATACGGAAATGAAAACGGTGAATATTTCTATGACATTGGTGCTCACGGTAATGACGTGAGTGGATTTACAGAAGGACATGCACTTGGATATGTTATTGATTCTACTCGATATGGAAATGTGTCAAGATTTATTAATAATAGTTGTTCACCGAATCTTGCGAATTACCAAGTTTATATAGAGAGCATGAATTGCGAGCATGCACATATTGGTCTTTATGCAAATAGAGATATTGCTTTGGGTGAAGAGTTGACATATAGTAATGATTATGAGTTTGTTGCTGGAGAAGGATATCCTTGTCTTTGTGGATCCTTGAAGTGCAGAAAGTTGTGGATATGCTAA 3288 0.396 MVMLTSSEEPGCSKSCQSIAYTNVDELVCIENCEHDILHWDDELNGNRLPVMDAPQLQQLSFSERLEIDKPMAVWFKWKGKWHAGIKCAKDDLPVSTQNDKPVHDNKNKYFIIFSPDAKNYSWVKMLFVLSIDEFPRPIAYETHQDGLKIVQDLTIARRFTMQNLVIEMINIVEQIHPRALIEDARDVIVWKQFAMEASDCRSYSDLGRMIQRLQKSIVQHYIMVEWKLHCSKSWVRRCEKAKNAEEIELLNEELVDSILWNDVCSLWFVAPEPRLGGVWKTWKHDVMNWFSRNPLLSSRIGSQTHASSSNGLCKKSSQAGFRRPKLQIRRPCAPSMHKSTVEVPVETEFPSQLMNGLSDIGVEVPVETEFPSQLMNGLSDIGVEVVDSDVLPITAIASRPMDEEESSMDEEEAIESFVEPDNTNSRQCKKFIKAKGRQCRRLAIGSDKYCFAHFSRKPEKQAKAPTPMCGGTTVAGTKCKHHSLPGFSFCRKHLSNVKTNNSSNSKRRRTKRKAKVNYSGSTSKRRVCEYLGVAPPKSPLDVDPVSIFKDGYYIARNIFGEILMLSGNDHNEALQWIDSPPNSNDDDNDNAVKCKVCFEEFSDDESLCNHWMDIHEREAYWLFMSYACAICLDSFTNKKLLESHVHNRHHVQFIEHCLLLKCNACGANFGIMGELWLHVKSVHSSEFKVTKAPNPLTLTTEDDSPNMTENENGASLEEPQPNNLNMLSIASTTSCEVNLEASLKKKYGYLPERLRLKATGDCSGRETLEDSHQDEIHPVISPHSFKSGSLQKAIVLCDDISFGKESTPVICVLDQEILNSLFEKERYVNLPTPWERFSYVTKQMLDRFPSHSQEERLQMRCSCSSSTCRKTCDHIYLFDDCFDNAKDIFGKPMRGKFPYNKNGRLMLKEGNSVYECNDMCRCGKTCRNRILQKGVQVKLEVFKTKEKGWGVRAGEDIFRGMFVCEYIGEVVEKTEVDKRRERYGNENGEYFYDIGAHGNDVSGFTEGHALGYVIDSTRYGNVSRFINNSCSPNLANYQVYIESMNCEHAHIGLYANRDIALGEELTYSNDYEFVAGEGYPCLCGSLKCRKLWIC* 1096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2103 1095 MobiDBLite consensus disorder prediction 694 719 - -
Psa4g2103 1095 MobiDBLite consensus disorder prediction 499 518 - -
Psa4g2103 1095 ProSiteProfiles SET domain profile. 938 1071 IPR001214 GO:0005515
Psa4g2103 1095 SMART set_7 938 1079 IPR001214 GO:0005515
Psa4g2103 1095 ProSiteProfiles Zinc finger C2H2 type domain profile. 593 621 IPR013087 -
Psa4g2103 1095 Pfam SET domain 949 1069 IPR001214 GO:0005515
Psa4g2103 1095 ProSiteProfiles Pre-SET domain profile. 860 935 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Psa4g2103 1095 ProSiteProfiles Zinc finger C2H2 type domain profile. 627 650 IPR013087 -
Psa4g2103 1095 PANTHER SET DOMAIN PROTEIN 719 1091 - -
Psa4g2103 1095 PANTHER SET DOMAIN PROTEIN 25 364 - -
Psa4g2103 1095 PANTHER SET DOMAIN PROTEIN 363 718 - -
Psa4g2103 1095 SMART preset_2 798 922 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Psa4g2103 1095 Gene3D SET domain 782 1077 IPR046341 -
Psa4g2103 1095 ProSitePatterns Zinc finger C2H2 type domain signature. 595 616 IPR013087 -
Psa4g2103 1095 Pfam Zinc finger C2H2-type, 3 repeats 629 723 IPR040689 -
Psa4g2103 1095 SUPERFAMILY SET domain 791 1084 IPR046341 -
Psa4g2103 1095 ProSitePatterns Zinc finger C2H2 type domain signature. 663 684 IPR013087 -
Psa4g2103 1095 Gene3D Classic Zinc Finger 569 654 - -
Psa4g2103 1095 ProSiteProfiles Zinc finger C2H2 type domain profile. 661 689 IPR013087 -
Psa4g2103 1095 Pfam Pre-SET motif 801 930 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Psa4g2103 1095 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 719 1091 - -
Psa4g2103 1095 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 25 364 - -
Psa4g2103 1095 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 363 718 - -
Psa4g2103 1095 SMART c2h2final6 593 616 IPR013087 -
Psa4g2103 1095 SMART c2h2final6 627 650 IPR013087 -
Psa4g2103 1095 SMART c2h2final6 661 684 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2103 Psa-Chr4 163668807 163673204 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2103 561 700 C2H2 Transcription Factor Family AT2G23740 37.857 2.65e-19 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa4g2103 Pre-SET 9.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2103 - - mtr:MTR_4g132610 1043.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2103 4 163668807 163673204 Psa4g2103 4 163668807 163673204 ECH