Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2078 ATGGCTGATGTTCCCATTTCGAGAGATAATATTGTTGGAACAGTATTATTACCAGATAAGGAACAAGAAAACTCTATCATAGTATCCACTCTGGTTCACGTTCTCTCGACAAATAATGCTGCTGTTCCTAACCAACAAAGGAAACGGGAATCAGATTGGAAACGGGAATCAGAAGCAGCCACGTCATCATGTGGCAGTGGGTCCCTCCCGATCCATTATGATCCTTACACGTGTCGTGCATGTAAAATCAACGGCTGTCTCGGTTGCAGATTCTTCATTGAGAAAGAGAATGGGGAGAAGAGAAAAAAGTACAGGGGGGTGAGGCAGAGAGCATGGGGAAAATGGGTGGCTGAGATACGAGACCCAAAAAGGGCAACTCGTGTTTGGCTTGGTACTTTTGCTACGGCGGAGAATGCTGCAAGAGCTTATGATCAAGCTGCTATTAAGTTTCATGGTGTTAGAGCTAAACTCAATTTTGAATCCTCTGATTATACTGTTAGTGATGAAAAGATGCAAAGTGCGAAAGTGAAGGAACATGTTGGTGAGATTGCAGGGATGAATCAAACAAAAACTACTATCTTATCATTCGGAGCAAGAAGTGAACTAGACTAG 612 0.4297 MADVPISRDNIVGTVLLPDKEQENSIIVSTLVHVLSTNNAAVPNQQRKRESDWKRESEAATSSCGSGSLPIHYDPYTCRACKINGCLGCRFFIEKENGEKRKKYRGVRQRAWGKWVAEIRDPKRATRVWLGTFATAENAARAYDQAAIKFHGVRAKLNFESSDYTVSDEKMQSAKVKEHVGEIAGMNQTKTTILSFGARSELD* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2078 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF109 20 177 - -
Psa4g2078 203 Gene3D AP2/ERF domain 102 161 IPR036955 GO:0003700|GO:0006355
Psa4g2078 203 Pfam AP2 domain 103 152 IPR001471 GO:0003700|GO:0006355
Psa4g2078 203 CDD AP2 102 162 IPR001471 GO:0003700|GO:0006355
Psa4g2078 203 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 20 177 - -
Psa4g2078 203 SMART rav1_2 103 166 IPR001471 GO:0003700|GO:0006355
Psa4g2078 203 ProSiteProfiles AP2/ERF domain profile. 103 160 IPR001471 GO:0003700|GO:0006355
Psa4g2078 203 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
Psa4g2078 203 PRINTS Ethylene responsive element binding protein signature 126 142 IPR001471 GO:0003700|GO:0006355
Psa4g2078 203 SUPERFAMILY DNA-binding domain 103 160 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2078 Psa-Chr4 160672467 160673211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2078 21 167 AP2-EREBP Transcription Factor Family AT4G34410 44.324 1.50e-32 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Psa4g2078 AP2 2.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2078 - - cam:101497463 223.787