Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2060 ATGGATCGGGCTGCGATGACGGTTGGACCGGGTATGGATATGCCGATCATGCACGACAGCGACCGTTACGATCTAGTCCGTGATATCGGGTCCGGAAATTTCGGCGTTGCTAGGTTGATGCAAGATAAGCAGACTAAGGAGCTTGTTGCCGTCAAGTATATCGAACGTGGTGATAAGATAGATGAAAATGTGAAGAGAGAAATCATTAATCACAGGTCTCTGAGACACCCTAACATTGTTAGGTTTAAGGAGGTCATTTTAACACCTACTCATCTTGCCATTGTAATGGAGTATGCGTCTGGAGGAGAACTTTTTGAGCGAATCAGCAATGCTGGGCATTTTTCTGAGGACGAGGCTAGGTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTACTGCCATGCAATGCAAGTATGTCACCGGGACCTGAAGTTGGAAAATACTTTGTTGGATGGAAGCCCGACTCCTCGTCTCAAGATATGTGATTTTGGTTACTCCAAGTCTTCAGTGCTTCATTCACAACCAAAGTCAACTGTGGGAACTCCTGCATATATTGCTCCAGAAGTGTTACTGAGGCAAGAGTATGATGGAAAGATTGCAGATGTTTGGTCTTGTGGAGTAACCTTATACGTGATGCTAGTGGGATCGTATCCCTTTGAAGATCCTAATGAGCCAAAGGATTTCCGGAAGACAATACAGAGAGTACTCAGTGTCCAGTATTCCATTCCAGACGCAGTTCAAATATCACCAGAGTGTCGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCTGCGGAGAGAATTACCATGCCTGAAATCTGGAAACATAAATGGTTTCTGACGAATCTTCCCATGGACCTGATGGATGAGAAGATAATGGGTAACCAATTTGAAGAGCCTGAACAGCCTATGCAGAGCATTGATACAATCATGCAGATAATTTCAGAAGCTACTATACCAGCAGCTGGAACCTGTTCTCTAGACCAGTTTATGGCAGATAACATTGATATGGACGATGAATTTGACGAATTGGAATATGAATCTGAGCTTGATATAGATAGCAGTGGAGAGATAGTGTATGCCATTTACTAG 1092 0.4368 MDRAAMTVGPGMDMPIMHDSDRYDLVRDIGSGNFGVARLMQDKQTKELVAVKYIERGDKIDENVKREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERISNAGHFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPTPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGSYPFEDPNEPKDFRKTIQRVLSVQYSIPDAVQISPECRHLISRIFVFDPAERITMPEIWKHKWFLTNLPMDLMDEKIMGNQFEEPEQPMQSIDTIMQIISEATIPAAGTCSLDQFMADNIDMDDEFDELEYESELDIDSSGEIVYAIY* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2060 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Psa4g2060 363 ProSiteProfiles Protein kinase domain profile. 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g2060 363 Pfam Protein kinase domain 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g2060 363 PANTHER SUCROSE NONFERMENTING 1(SNF1)-RELATED KINASE 14 356 - -
Psa4g2060 363 SMART serkin_6 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g2060 363 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Psa4g2060 363 Gene3D Transferase(Phosphotransferase) domain 1 99 285 - -
Psa4g2060 363 SUPERFAMILY Protein kinase-like (PK-like) 15 314 IPR011009 -
Psa4g2060 363 PANTHER SERINE/THREONINE KINASE 14 356 - -
Psa4g2060 363 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2060 Psa-Chr4 158448333 158451622 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2060 22 283 CBL-interacting serine-threonine protein kinases AT5G25110 43.431 1.16e-65 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Psa4g2060 Pkinase 1.8e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2060 K14498 - gmx:100806949 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2060 4 158448333 158451622 Psa2g3742 2 398395024 398398197 PCT