Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2030 ATGTCCAAAATGGTGGCGGTTGATGAAAAGAAGAAGGCTCATATGGTTCCACAATATGATGATCAAGGTGTAACTTTGGCATTTCATGGCAGAGAGGTCTATGATGCCGTTCCTATTGCACATTTCCCTAAAAAGTCTCCTTTAAATGATAAACATAACAAGGTGGTGGAAAATAAACACAGACAAGCAACACCTGATGAGGGACAATCACAGAAGCTTGCAAGCTCATCTAAAGAGACAACAGATGCAACATTTTCTCGTGGCGAGGCTGTGATTCAAGCCGAAGGACTCCGATCAAATTTGCAACAAGAGTTCCCAAGTTTTGTGAAGTCCTTGGTCAGATCACATGTAGCCAGTTGTTTTTGGATGGGACTACCCGTGGCGTTCTGTAAAAGACATTTACCAGATAAGGATACAACTATCACTTTGGAAGATGAGTCTGGTAGAGAATACAAGACAAAATACATTGCATGTAAAACAGGATTAAGTGCTGGTTGGAGACAGTTTTCCGCTGTGCATAAATTGCTAGACGGTGATGTGGTGGTATTTCAATTAGTCGAACCCACCAAATTTAAGGTTTATATAATAAGAGCTATGAGGGAACTAGAGAATCAAGAAAGTTGCTCAAAACAAAAAGTTGGAGGCAAAAATAACATAGATACTGATGTTGTAGCATGTAATAGTCCAAAAAGAAAAAATGGTAAACCTATCCCACAAGACACCCAAAAGAAAAATAAAATTACTGTATCAAAAACGGAGACTAAGGCTAAACAATATCCAGAACAATATGAAAATGATAGTGAGGAAGCTTTGTCTGAAATATTGGAGGCATATAAAATGCCTGAATTCAAAGATTTAAATGGTTTCGAAAATTTCAGAATCATAGTCAACGGAATGCTAATTGATAATGAACTGTCTACCGAAGTTCGAAACAAGTACTACAAACTCTGTTACAGTCAACAAGCTTTTCTTCATGACAATCTCATCAAAGGCTTGAACTATAATTTAGTTTCTGGAGTTATATCTGAAGTTGTTAACATTGCTGATGCAATAAAAGTCAGTGTGATATCTACGCCGCGTTTTGAGTTTTATAATTGGGATAAAACGTTGCTAGCATTTGAGAATTTGGGCATGAATGTTGAGTTTTTGAGACATCGATTGCGCAGGCTTGTGAGCCTTGCTTATGAGACGGACAACGGCTTAGAGACTAGAAGATACTTGGCGTATAGAACCGAGGAACACGGTGGAGTAGAGGATGAAATAAAGAATATGGAAACGAAGCTCGTGGAATTGAAAGAAGCTTGTAATGGATTTGGTGATTATCTTGAGAGTTTGAAGCACAAAGCTGAAAGTGATGTTAATAATGAAGAATTTGCTGATTTAAGACATTAA 1392 0.3764 MSKMVAVDEKKKAHMVPQYDDQGVTLAFHGREVYDAVPIAHFPKKSPLNDKHNKVVENKHRQATPDEGQSQKLASSSKETTDATFSRGEAVIQAEGLRSNLQQEFPSFVKSLVRSHVASCFWMGLPVAFCKRHLPDKDTTITLEDESGREYKTKYIACKTGLSAGWRQFSAVHKLLDGDVVVFQLVEPTKFKVYIIRAMRELENQESCSKQKVGGKNNIDTDVVACNSPKRKNGKPIPQDTQKKNKITVSKTETKAKQYPEQYENDSEEALSEILEAYKMPEFKDLNGFENFRIIVNGMLIDNELSTEVRNKYYKLCYSQQAFLHDNLIKGLNYNLVSGVISEVVNIADAIKVSVISTPRFEFYNWDKTLLAFENLGMNVEFLRHRLRRLVSLAYETDNGLETRRYLAYRTEEHGGVEDEIKNMETKLVELKEACNGFGDYLESLKHKAESDVNNEEFADLRH* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2030 463 ProSiteProfiles B3 DNA-binding domain profile. 108 199 IPR003340 GO:0003677
Psa4g2030 463 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 56 400 IPR044837 -
Psa4g2030 463 MobiDBLite consensus disorder prediction 67 85 - -
Psa4g2030 463 Gene3D - 89 200 IPR015300 -
Psa4g2030 463 Pfam B3 DNA binding domain 108 198 IPR003340 GO:0003677
Psa4g2030 463 Coils Coil 414 434 - -
Psa4g2030 463 SMART B3_2 108 199 IPR003340 GO:0003677
Psa4g2030 463 MobiDBLite consensus disorder prediction 60 85 - -
Psa4g2030 463 CDD B3_DNA 106 197 IPR003340 GO:0003677
Psa4g2030 463 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100-LIKE 56 400 - -
Psa4g2030 463 SUPERFAMILY DNA-binding pseudobarrel domain 102 197 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2030 Psa-Chr4 154789430 154794659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2030 86 251 B3 DNA Binding Superfamily AT3G19184 41.566 2.68e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa4g2030 B3 8.6e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2030 - - gmx:100819237 570.466